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Standardizer freezes Windows 10 64bit
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Bernard

Joined: 18 Apr 2012
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Link to postPosted: Fri Jan 08, 2016 9:35 pmPost subject: Standardizer freezes Windows 10 64bit Reply with quote

I try the stand alone standardizer on Windows 10 64 bit, using the 64 bit version of the standardizer. When I click run, nothing gets executed and most the time the standardizer is frozen. Sometimes it does not freeze but does only execute nothing.

Zsolt
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Joined: 11 Jan 2006
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Link to postPosted: Mon Jan 11, 2016 11:52 amPost subject: Reply with quote

Could you provide more information about this issue? Please let us know your

  • JChem version,
  • Java version,
  • Standardizer configuration (XML file),
  • input molecules, if it's not confidential information (any molecule set will do which results the error)
Bernard

Joined: 18 Apr 2012
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Link to postPosted: Wed Jan 13, 2016 5:45 pmPost subject: Reply with quote

  • JChem version, I see only JChem Manager 15.12.14.0
  •  

  • Java version, 1.8.0_66
    1.8 1.8.0_66 http://java.sun.com/products/autodl/j2se C:\Program Files\Java\jre1.8.0_66\bin\javaw.exe
    true
  •  

  • Standardizer configuration (XML file), included
  •  

  • input molecules, if it's not confidential information (any molecule set will do which results the error); included
  •  

    I Installed from these files:




     Filename: standardizer.xml    Filesize: 4.37 KB    Downloaded: 135 Time(s)
     Description:  

     Filename: test12.sdf    Filesize: 19.08 KB    Downloaded: 140 Time(s)
     Description:  
    Zsolt
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    Link to postPosted: Thu Jan 14, 2016 1:58 pmPost subject: Reply with quote

    Thanks for the files. We can reproduce the error, and we will fix it.

    Zsolt
    ChemAxon personnel
    Joined: 11 Jan 2006
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    Link to postPosted: Thu Jan 14, 2016 2:50 pmPost subject: Reply with quote

    The error was caused by an old, deprecated search option, which is still present in the XML configuration file. Quick fix: remove the search options from the XML config file. I have removed it from the attached standardizer.xml, the updated file is attached.

    We will fix the bug later as well. It's not related to windows 10, and it will cause error only with some configuration files created in 2013 or earlier.




     Filename: standardizer_updated.xml    Filesize: 2.39 KB    Downloaded: 141 Time(s)
     Description:  
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