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Error: Failed to get abbreviations.
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Brendan

Joined: 12 Jul 2012
Posts: 44

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Link to postPosted: Wed Jul 16, 2014 4:29 pmPost subject: Error: Failed to get abbreviations. Reply with quote

Hi,

 

Running the latest (14.7.14.0) version of JChem, I have the following error. I load in a config file for the standardizer, and run the following:

Standardizer standardizer = new Standardizer(standardizerConfigFile);

I get the following cryptic message:

chemaxon.standardizer.advancedactions.GroupList setAll

SEVERE: Failed to get abbreviations.

Possibly there's a library missing (though this isn't a ClassDef error), but I'm at a loss as to which one I'm not including. I'm hoping someone can at least explain what the error means and where I'm going wrong.

Cheers,

Brendan

Zsolt
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Joined: 11 Jan 2006
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Link to postPosted: Thu Jul 17, 2014 8:26 amPost subject: Reply with quote

Hi Brendan,

Could you upload your standardizer XML configuration file here, so we can use it to reproduce the error?
You can also send it by email to standardizer-support _at_ chemaxon.com 

Zsolt

Brendan

Joined: 12 Jul 2012
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Link to postPosted: Thu Jul 17, 2014 9:23 amPost subject: Reply with quote

Hi Zsolt,

Attached. I suspect this isn't really a standardizer error but rather one of the .jar library files missing in my POM, but with such a cryptic message I'm not sure which one to look in.

Cheers,

Brendan




 Filename: standardizerConfig.xml    Filesize: 694 Bytes    Downloaded: 162 Time(s)
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Zsolt
ChemAxon personnel
Joined: 11 Jan 2006
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Link to postPosted: Thu Jul 17, 2014 1:05 pmPost subject: Reply with quote

Brendan,

It seems standardizer cannot find the "/chemaxon/marvin/templates/default.abbrevgroup" file, which is required by some standardizer actions. The default.abbrevgroup file is located in com.chemaxon-marvin-gui.jar module, so you need to add this module.

Let me know if it works.

Zsolt

Brendan

Joined: 12 Jul 2012
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Link to postPosted: Thu Jul 17, 2014 1:27 pmPost subject: Reply with quote

Hi Zsolt,

Many thanks, all working now. I never thought marvin-gui would hold it....

Cheers,

Brendan

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