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H atoms in MarvinSpace
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Bob

Joined: 15 Jun 2004
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Link to postPosted: Wed Jan 06, 2010 2:04 pmPost subject: H atoms in MarvinSpace Reply with quote

Why does MarvinSpace 5.2.5.1 not show explicit H atoms?  There should at least be an option for it.

Gabor
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Link to postPosted: Thu Jan 07, 2010 4:48 pmPost subject: Reply with quote

Dear Bob,

 

Display - Draw type - Ligand - Hydrogenes works for me.

 

Regards,

Gabor

Bob

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Link to postPosted: Mon Jan 11, 2010 3:06 pmPost subject: Reply with quote

In standalone MarvinSpace 5.2.5.1, under Display -> Draw type -> Ligand, I see only Wire and Ball options.  In the MarvinSpace viewer, I don't have any menu options at all.

Also, when I open a new file in standalone MarvinSpace, nothing appears in the window until I click on a menu title.  

Miklos
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Link to postPosted: Thu Jan 21, 2010 5:36 pmPost subject: Reply with quote

Hi Bob,

We planned in the past to launch full featured mspace window from msketch, but it had very low priority. Now I set the 'due in version' tag of the related task to 5.3.1 and I also increased its priority.

The refresh problem is also a known issue, we will try to deal with that though there are nasty platform dependencies which we may not be able to resolve.

 

Miklos

Bob

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Link to postPosted: Sun Jan 24, 2010 1:18 amPost subject: Reply with quote

OK, that explains why it doesn't work in the MarvinSpace viewer, but I still do not see any option to show H atoms in the desktop version (5.2.6).

Miklos
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Link to postPosted: Wed Feb 17, 2010 11:01 amPost subject: Reply with quote

Is the "Drawtype" pulldown menu displayed properly? I mean, that it is fully visible (and not buried behind the draw canvas).

Miklos

Bob

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Link to postPosted: Thu Feb 18, 2010 2:38 pmPost subject: Reply with quote

Now that you mention it, I do see that there are some additional menu choices below Draw Type -> and Color Type ->, but they are hidden behind the black display frame.

Gabor
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Link to postPosted: Mon Feb 22, 2010 5:29 pmPost subject: Reply with quote

Dear Bob,

 

This problem (menus behind canvas) was reported earlier ( https://www.chemaxon.com/forum/ftopic4677.html ). Unfortunatelly no progress has been made so far.

To help us collect relevant info about this bug could you tell us

  • your OS version
  • output of "java -version"
  • output of "mspace -v"

Thanks for your help.

Regards,

Gabor

Bob

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Link to postPosted: Mon Feb 22, 2010 8:25 pmPost subject: Reply with quote

MacOS 10.5.8.

Grossman-CP-339-iMac:~ Bob$ java -version
java version "1.5.0_22"
Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_22-b03-333-9M3125)
Java HotSpot(TM) Client VM (build 1.5.0_22-147, mixed mode, sharing)
Grossman-CP-339-iMac:MarvinBeans Bob$ mspace -v
-bash: mspace: command not found

Gabor
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Link to postPosted: Tue Feb 23, 2010 2:27 pmPost subject: Reply with quote

Dear Bob,

 

Thanks.

Gabor

Akos
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Joined: 09 Mar 2007
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Link to postPosted: Thu Feb 25, 2010 7:28 pmPost subject: Reply with quote

Hi Bob,

I would like to inform you that we had to make an urgent patch release that was named 5.3.1; the feature mentioned in this topic is targeted in the patch release coming at the end of March (probably named 5.3.2).

Best regards,

Akos

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