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substructure search in Markush tables fails in IJC 2.4.1
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Oleg

Joined: 04 Mar 2007
Posts: 39

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Link to postPosted: Sat Jan 10, 2009 8:27 pmPost subject: substructure search in Markush tables fails in IJC 2.4.1 Reply with quote

Hi all,

I am trying to perform a substructure search in a Markush JChem table and I get the following error:

Code:
java.lang.IllegalAccessError: tried to access method chemaxon.util.HitDisplayTool.getHits(Lchemaxon/struc/Molecule;Lchemaxon/enumeration/supergraph/Supergraph;I)[Lchemaxon/struc/Molecule; from class com.im.ijc.renderers.impl.StructureRenderer
   at com.im.ijc.renderers.impl.StructureRenderer.formatMol(StructureRenderer.java:578)
   at com.im.ijc.renderers.impl.StructureRenderer.getWidgetCellRendererComponent(StructureRenderer.java:377)
   at com.im.ijc.renderers.impl.StructureRenderer.getTableCellRendererComponent(StructureRenderer.java:301)
   at javax.swing.JTable.prepareRenderer(JTable.java:5729)
   at javax.swing.plaf.basic.BasicTableUI.paintCell(BasicTableUI.java:2075)
   at javax.swing.plaf.basic.BasicTableUI.paintCells(BasicTableUI.java:1977)
   at javax.swing.plaf.basic.BasicTableUI.paint(BasicTableUI.java:1773)
   at javax.swing.plaf.ComponentUI.update(ComponentUI.java:143)
   at javax.swing.JComponent.paintComponent(JComponent.java:763)
   at com.im.ijc.widgets.table.WBTable.paintComponent(WBTable.java:1252)
   at javax.swing.JComponent.paint(JComponent.java:1027)
   at javax.swing.JComponent.paintToOffscreen(JComponent.java:5122)
   at javax.swing.BufferStrategyPaintManager.paint(BufferStrategyPaintManager.java:277)
   at javax.swing.RepaintManager.paint(RepaintManager.java:1217)
   at javax.swing.JComponent._paintImmediately(JComponent.java:5070)
   at javax.swing.JComponent.paintImmediately(JComponent.java:4880)
   at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:803)
   at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:714)
   at javax.swing.RepaintManager.seqPaintDirtyRegions(RepaintManager.java:694)
[catch] at javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run(SystemEventQueueUtilities.java:128)
   at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
   at java.awt.EventQueue.dispatchEvent(EventQueue.java:597)
   at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
   at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
   at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
   at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
   at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
   at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)


I can reproduce the error on Linux (Suse 10.3, x64, java 1.6.10) and windows xp.

To reproduce the error create a Markush table in IJC 2.4.1 and add the attached structure. Open query dialog and use as a query substructure "Clc1ccccc1".

I did the same steps in IJC 2.3.1 and I get no errors.

Oleg.



 Filename: test1.mrv    Filesize: 2.58 KB    Downloaded: 422 Time(s)
 Description:  
Tim
ChemAxon personnel
Joined: 05 Oct 2004
Posts: 1703

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Link to postPosted: Sun Jan 11, 2009 11:38 amPost subject: Reply with quote

Thanks for the report.
This is due to one particular module not being updated correctly in the 2.4.1 update center.
We will fix the problem and provide a new update shortly.
In the meantime, the Java Web Start version is not affected by this, so you might want to try this version instead.
http://www.chemaxon.com/instantjchem-jws/stable/master.jnlp

Tim
Tim
ChemAxon personnel
Joined: 05 Oct 2004
Posts: 1703

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Link to postPosted: Tue Jan 13, 2009 5:20 pmPost subject: Reply with quote

We have just released a minor update to fix this problem.
It is available from the update center.
Java Web Start versions are unafected and will not be updated.

Tim
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