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Structure manipulation: Canonicalization / standardization
 Moderators: zmohacsi, spilbak
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No new posts How can I remove charges from the molecule?
4 anastasia.karchevskaya.14 24667 Mon Nov 14, 2016 4:52 pm
zmohacsi View latest post
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1 fafnir1990 14255 Tue Sep 13, 2016 10:19 am
zmohacsi View latest post
No new posts Standarization on whole database
2 fafnir1990 12984 Mon Aug 22, 2016 8:08 am
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No new posts AutoMapper class
2 nuno-oz 12551 Mon Aug 08, 2016 10:17 am
zmohacsi View latest post
No new posts Cannot execute Standardizer.bat on the DOS level
2 beedalwis 12017 Mon Jul 11, 2016 9:27 am
bdalwis View latest post
No new posts how does template clean matching work?
1 contact 12278 Mon Jun 27, 2016 11:28 am
zmohacsi View latest post
No new posts prevent template layout changes in partial clean
3 contact 13814 Fri Jun 17, 2016 9:46 am
zmohacsi View latest post
No new posts user.abbrevgroup file ignored by structure checker
3 contact 14807 Mon May 30, 2016 11:28 am
zmohacsi View latest post
No new posts standardizer java api-How to get started
3 contact 12731 Fri May 06, 2016 10:42 am
zmohacsi View latest post
No new posts generate the pictueres of mapped reaction in command line
1 wu_l 12915 Thu Mar 10, 2016 2:24 pm
zmohacsi View latest post
No new posts How can I map reaction using changing style in command line
1 tuweizhong 13143 Mon Jan 25, 2016 11:30 am
zmohacsi View latest post
No new posts Standardizer freezes Windows 10 64bit
4 beedalwis 14144 Thu Jan 14, 2016 2:50 pm
zmohacsi View latest post
No new posts Clean2D (partial) switches double bond stereochemistry
2 tim.parrott 15078 Fri Oct 09, 2015 4:54 pm
zmohacsi View latest post
No new posts How to arrange molecules in multiple columns
2 mrsouthern 13730 Tue May 05, 2015 3:55 pm
mrsouthern View latest post
No new posts Disconnected structures not reconnecting with Standardizer
6 mike 16680 Mon Apr 13, 2015 12:39 pm
avolford View latest post
No new posts add attached data in bulk
1 juan.xiong 12957 Tue Apr 07, 2015 5:04 pm
zmohacsi View latest post
No new posts Straight alkyl or alkenyl chains with template based clean
2 tkind 13627 Mon Mar 30, 2015 6:12 pm
TobiasKind View latest post
No new posts Using several templates as input for jc_standardize
5 alenaaa 14714 Fri Feb 27, 2015 9:17 am
kvajda View latest post
No new posts How does partial clean works?
4 alenaaa 17156 Thu Feb 19, 2015 3:40 pm
alena View latest post
No new posts how to estimate the quality of jc_standardize clean:full
2 alenaaa 13417 Thu Feb 19, 2015 2:16 pm
alena View latest post
No new posts Replace Atoms
1 ar 14098 Tue Feb 10, 2015 10:36 am
zmohacsi View latest post
No new posts Standardizer API function to replicate Marvin Clean in 2D?
4 andrew126 15116 Thu Jan 22, 2015 12:53 pm
awrk View latest post
No new posts Jchem bases: the problem of standardier molecular structure
19 missduckyan 33808 Thu Dec 25, 2014 6:34 am
missducksong View latest post
No new posts Bug report (14.7.7)
2 brendan.jackson 13527 Wed Dec 17, 2014 4:07 pm
brendan.jackson View latest post
No new posts Standardizer command line issue - spaces in file path
2 pavel_polishchuk 13722 Tue Nov 18, 2014 12:51 pm
DrDom View latest post
No new posts Bug Report: Custom IDs are not exported
4 x12z34y56 16325 Fri Nov 14, 2014 11:20 am
zmohacsi View latest post
No new posts Standardizer adds additional empty lines to an SDFile
4 beedalwis 15446 Wed Sep 10, 2014 9:16 am
pcseh View latest post
No new posts the problem about standaradizer molecular structure
2 missduckyan 13521 Tue Sep 09, 2014 11:43 am
missducksong View latest post
No new posts Feature Installation insufficiency
1 missduckyan 13218 Mon Sep 01, 2014 8:16 am
zmohacsi View latest post
No new posts Standardizer Stripping Stereochemistry
1 scott.becker 13098 Mon Aug 25, 2014 1:52 pm
pcseh View latest post
No new posts Nitro group transformation
0 pavel_polishchuk 13278 Mon Aug 11, 2014 11:21 am
DrDom View latest post
No new posts ChemAxon standardizer salt stripper bug(?)
2 samuel.webb 13565 Fri Aug 01, 2014 9:47 am
zmohacsi View latest post
No new posts Standardizer exception
3 robert.grossman 13972 Fri Jul 18, 2014 11:02 am
zmohacsi View latest post
No new posts Error: Failed to get abbreviations.
4 brendan.jackson 14057 Thu Jul 17, 2014 1:27 pm
brendan.jackson View latest post
No new posts overlapping bonds with TBDPS super atom
3 andrew126 14983 Tue Jul 15, 2014 1:47 pm
awrk View latest post
No new posts GUI to command line
2 anna.lovrics 15144 Thu Jul 03, 2014 2:15 pm
lovricsa View latest post
No new posts Mesomerize action fails to produce a canonical structure
1 tim.parrott 17694 Thu Jun 19, 2014 1:55 pm
Jozsi View latest post
No new posts fatal standardizer bug in 6.1.7
2 horvath 14807 Fri May 23, 2014 1:23 pm
zmohacsi View latest post
No new posts Removing Atoms
2 lochana.m 15213 Fri Jan 31, 2014 6:42 am
Jozsi View latest post
No new posts AutoMapper.guessMappingStyle() alternative
4 lbogdanov 16426 Fri Jan 17, 2014 11:34 am
zmohacsi View latest post
No new posts problem of standardization
9 kiet.tran 18485 Wed Dec 18, 2013 11:05 am
kvajda View latest post
No new posts Tautomerize is 80x slower for some compounds vs. others
8 tim.parrott 35748 Tue Nov 19, 2013 11:35 am
brendan.jackson View latest post
No new posts structurechecker script not passing java options to java
1 stephen.d.pickett 15552 Wed Oct 16, 2013 3:57 pm
zmohacsi View latest post
No new posts JPanel for standardizer configuration
2 samuel.webb 15163 Mon Oct 14, 2013 12:21 pm
swlhasa View latest post
No new posts Structure Checker in PL/SQL with exceptions for abbrevGroup
19 edith.richter 34230 Fri Sep 13, 2013 6:15 pm
pkovacs View latest post
No new posts How can I recognize each structure's name in sdf file?
6 y_sakai 16979 Fri Aug 30, 2013 10:37 am
atomin View latest post
No new posts ConcurrentStandardizerProcessor takes Deprecated Standardize
6 brendan.jackson 17424 Wed Aug 28, 2013 2:42 pm
zmohacsi View latest post
No new posts Structure Checker - Infinite Loop?
2 brendan.jackson 15367 Wed Aug 28, 2013 2:24 pm
zmohacsi View latest post
No new posts Structure Checker and broken SDF files
1 tkind 14867 Thu Aug 22, 2013 7:25 pm
zmohacsi View latest post
No new posts How do I output absolute SMILES from jcf.standardize()
1 mike 13260 Fri Aug 16, 2013 8:19 am
zmohacsi View latest post
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