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Structure manipulation: Canonicalization / standardization
 Moderators: zmohacsi, spilbak
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No new posts How can I remove charges from the molecule?
4 anastasia.karchevskaya.14 22387 Mon Nov 14, 2016 4:52 pm
zmohacsi View latest post
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1 fafnir1990 12422 Tue Sep 13, 2016 10:19 am
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No new posts Standarization on whole database
2 fafnir1990 11184 Mon Aug 22, 2016 8:08 am
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No new posts AutoMapper class
2 nuno-oz 10517 Mon Aug 08, 2016 10:17 am
zmohacsi View latest post
No new posts Cannot execute Standardizer.bat on the DOS level
2 beedalwis 10174 Mon Jul 11, 2016 9:27 am
bdalwis View latest post
No new posts how does template clean matching work?
1 contact 10583 Mon Jun 27, 2016 11:28 am
zmohacsi View latest post
No new posts prevent template layout changes in partial clean
3 contact 11878 Fri Jun 17, 2016 9:46 am
zmohacsi View latest post
No new posts user.abbrevgroup file ignored by structure checker
3 contact 13019 Mon May 30, 2016 11:28 am
zmohacsi View latest post
No new posts standardizer java api-How to get started
3 contact 10947 Fri May 06, 2016 10:42 am
zmohacsi View latest post
No new posts generate the pictueres of mapped reaction in command line
1 wu_l 11123 Thu Mar 10, 2016 2:24 pm
zmohacsi View latest post
No new posts How can I map reaction using changing style in command line
1 tuweizhong 11313 Mon Jan 25, 2016 11:30 am
zmohacsi View latest post
No new posts Standardizer freezes Windows 10 64bit
4 beedalwis 12458 Thu Jan 14, 2016 2:50 pm
zmohacsi View latest post
No new posts Clean2D (partial) switches double bond stereochemistry
2 tim.parrott 13207 Fri Oct 09, 2015 4:54 pm
zmohacsi View latest post
No new posts How to arrange molecules in multiple columns
2 mrsouthern 12036 Tue May 05, 2015 3:55 pm
mrsouthern View latest post
No new posts Disconnected structures not reconnecting with Standardizer
6 mike 14793 Mon Apr 13, 2015 12:39 pm
avolford View latest post
No new posts add attached data in bulk
1 juan.xiong 11306 Tue Apr 07, 2015 5:04 pm
zmohacsi View latest post
No new posts Straight alkyl or alkenyl chains with template based clean
2 tkind 11968 Mon Mar 30, 2015 6:12 pm
TobiasKind View latest post
No new posts Using several templates as input for jc_standardize
5 alenaaa 12715 Fri Feb 27, 2015 9:17 am
kvajda View latest post
No new posts How does partial clean works?
4 alenaaa 14044 Thu Feb 19, 2015 3:40 pm
alena View latest post
No new posts how to estimate the quality of jc_standardize clean:full
2 alenaaa 11583 Thu Feb 19, 2015 2:16 pm
alena View latest post
No new posts Replace Atoms
1 ar 12289 Tue Feb 10, 2015 10:36 am
zmohacsi View latest post
No new posts Standardizer API function to replicate Marvin Clean in 2D?
4 andrew126 13287 Thu Jan 22, 2015 12:53 pm
awrk View latest post
No new posts Jchem bases: the problem of standardier molecular structure
19 missduckyan 31034 Thu Dec 25, 2014 6:34 am
missducksong View latest post
No new posts Bug report (14.7.7)
2 brendan.jackson 11728 Wed Dec 17, 2014 4:07 pm
brendan.jackson View latest post
No new posts Standardizer command line issue - spaces in file path
2 pavel_polishchuk 11994 Tue Nov 18, 2014 12:51 pm
DrDom View latest post
No new posts Bug Report: Custom IDs are not exported
4 x12z34y56 14424 Fri Nov 14, 2014 11:20 am
zmohacsi View latest post
No new posts Standardizer adds additional empty lines to an SDFile
4 beedalwis 13603 Wed Sep 10, 2014 9:16 am
pcseh View latest post
No new posts the problem about standaradizer molecular structure
2 missduckyan 11677 Tue Sep 09, 2014 11:43 am
missducksong View latest post
No new posts Feature Installation insufficiency
1 missduckyan 11286 Mon Sep 01, 2014 8:16 am
zmohacsi View latest post
No new posts Standardizer Stripping Stereochemistry
1 scott.becker 11335 Mon Aug 25, 2014 1:52 pm
pcseh View latest post
No new posts Nitro group transformation
0 pavel_polishchuk 11522 Mon Aug 11, 2014 11:21 am
DrDom View latest post
No new posts ChemAxon standardizer salt stripper bug(?)
2 samuel.webb 11828 Fri Aug 01, 2014 9:47 am
zmohacsi View latest post
No new posts Standardizer exception
3 robert.grossman 12181 Fri Jul 18, 2014 11:02 am
zmohacsi View latest post
No new posts Error: Failed to get abbreviations.
4 brendan.jackson 12236 Thu Jul 17, 2014 1:27 pm
brendan.jackson View latest post
No new posts overlapping bonds with TBDPS super atom
3 andrew126 13152 Tue Jul 15, 2014 1:47 pm
awrk View latest post
No new posts GUI to command line
2 anna.lovrics 11915 Thu Jul 03, 2014 2:15 pm
lovricsa View latest post
No new posts Mesomerize action fails to produce a canonical structure
1 tim.parrott 15820 Thu Jun 19, 2014 1:55 pm
Jozsi View latest post
No new posts fatal standardizer bug in 6.1.7
2 horvath 13097 Fri May 23, 2014 1:23 pm
zmohacsi View latest post
No new posts Removing Atoms
2 lochana.m 13485 Fri Jan 31, 2014 6:42 am
Jozsi View latest post
No new posts AutoMapper.guessMappingStyle() alternative
4 lbogdanov 14607 Fri Jan 17, 2014 11:34 am
zmohacsi View latest post
No new posts problem of standardization
9 kiet.tran 16504 Wed Dec 18, 2013 11:05 am
kvajda View latest post
No new posts Tautomerize is 80x slower for some compounds vs. others
8 tim.parrott 31321 Tue Nov 19, 2013 11:35 am
brendan.jackson View latest post
No new posts structurechecker script not passing java options to java
1 stephen.d.pickett 13619 Wed Oct 16, 2013 3:57 pm
zmohacsi View latest post
No new posts JPanel for standardizer configuration
2 samuel.webb 13311 Mon Oct 14, 2013 12:21 pm
swlhasa View latest post
No new posts Structure Checker in PL/SQL with exceptions for abbrevGroup
19 edith.richter 31413 Fri Sep 13, 2013 6:15 pm
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No new posts How can I recognize each structure's name in sdf file?
6 y_sakai 15053 Fri Aug 30, 2013 10:37 am
atomin View latest post
No new posts ConcurrentStandardizerProcessor takes Deprecated Standardize
6 brendan.jackson 15490 Wed Aug 28, 2013 2:42 pm
zmohacsi View latest post
No new posts Structure Checker - Infinite Loop?
2 brendan.jackson 13540 Wed Aug 28, 2013 2:24 pm
zmohacsi View latest post
No new posts Structure Checker and broken SDF files
1 tkind 13066 Thu Aug 22, 2013 7:25 pm
zmohacsi View latest post
No new posts How do I output absolute SMILES from jcf.standardize()
1 mike 11510 Fri Aug 16, 2013 8:19 am
zmohacsi View latest post
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