numerous exceptions upon startup

User 870ab5b546

12-04-2016 15:08:50

When we restart our server, we observe about 18000 lines of exceptions generated by Web Services as it starts up. Below is just the beginning of what we see. In the end, it doesn't appear to affect performance, but it sure generates a lot of output in our log files. Are we doing something wrong, or is there a problem in your code?


Apr 12, 2016 10:26:49 AM org.apache.catalina.startup.HostConfig deployDescriptor
INFO: Deploying configuration descriptor manager.xml
Apr 12, 2016 10:26:49 AM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive webservices.war
Tue Apr 12 10:26:53 EDT 2016 Thread[C3P0PooledConnectionPoolManager[identityToken->zoy01n9g30jzzf18bx2oo|226064]-HelperThread-#0,5,main] java.io.FileNotFoundException: derby.log (Permission denied)
----------------------------------------------------------------
Tue Apr 12 10:26:53 EDT 2016:
Booting Derby version The Apache Software Foundation - Apache Derby - 10.10.1.1 - (1458268): instance a816c00e-0154-0ade-2e3a-000011af9e00
on database directory /usr/share/tomcat6/.chemaxon/app_db with class loader WebappClassLoader
context: /webservices
delegate: false
repositories:
/WEB-INF/classes/
----------> Parent Classloader:
org.apache.catalina.loader.StandardClassLoader@ad9418

Loaded from file:/var/lib/tomcat6/webapps/webservices/WEB-INF/lib/derby-10.10.1.1.jar
java.vendor=Oracle Corporation
java.runtime.version=1.8.0_45-b14
user.dir=/var/lib/tomcat6
os.name=Linux
os.arch=i386
os.version=2.6.32-33-generic-pae
derby.system.home=null
Database Class Loader started - derby.database.classpath=''
Tue Apr 12 10:27:02 EDT 2016 Thread[C3P0PooledConnectionPoolManager[identityToken->zoy01n9g30k6nzbrocp0|3d9e1a]-HelperThread-#2,5,main] java.io.FileNotFoundException: derby.log (Permission denied)
Tue Apr 12 10:27:02 EDT 2016 Thread[C3P0PooledConnectionPoolManager[identityToken->zoy01n9g30k6nzbrocp0|3d9e1a]-HelperThread-#2,5,main] Cleanup action starting
ERROR XBM0J: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.services.monitor.StorageFactoryService$10.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.services.monitor.StorageFactoryService.createServiceRoot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.createPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.createPersistentService(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.createDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Cleanup action completed
Tue Apr 12 10:27:02 EDT 2016 Thread[C3P0PooledConnectionPoolManager[identityToken->zoy01n9g30k6nzbrocp0|3d9e1a]-HelperThread-#1,5,main] Cleanup action starting
ERROR XBM0J: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.services.monitor.StorageFactoryService$10.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.services.monitor.StorageFactoryService.createServiceRoot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.createPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.createPersistentService(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.createDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Cleanup action completed
Tue Apr 12 10:27:02 EDT 2016 Thread[C3P0PooledConnectionPoolManager[identityToken->zoy01n9g30k6nzbrocp0|3d9e1a]-HelperThread-#1,5,main] Cleanup action starting
java.sql.SQLException: Failed to create database '/usr/share/tomcat6/.chemaxon/app_db', see the next exception for details.
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.createDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Caused by: java.sql.SQLException: Failed to create database '/usr/share/tomcat6/.chemaxon/app_db', see the next exception for details.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
... 19 more
Caused by: java.sql.SQLException: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
... 16 more
Caused by: ERROR XBM0J: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.services.monitor.StorageFactoryService$10.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.services.monitor.StorageFactoryService.createServiceRoot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.createPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.createPersistentService(Unknown Source)
... 16 more
============= begin nested exception, level (1) ===========
java.sql.SQLException: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.createDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Caused by: java.sql.SQLException: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
... 21 more
Caused by: ERROR XBM0J: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.services.monitor.StorageFactoryService$10.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.services.monitor.StorageFactoryService.createServiceRoot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.createPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.createPersistentService(Unknown Source)
... 16 more
============= end nested exception, level (1) ===========
============= begin nested exception, level (2) ===========
java.sql.SQLException: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.createDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Caused by: ERROR XBM0J: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.services.monitor.StorageFactoryService$10.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.services.monitor.StorageFactoryService.createServiceRoot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.createPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.createPersistentService(Unknown Source)
... 16 more
============= end nested exception, level (2) ===========
============= begin nested exception, level (3) ===========
ERROR XBM0J: Directory /usr/share/tomcat6/.chemaxon/app_db already exists.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.services.monitor.StorageFactoryService$10.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.services.monitor.StorageFactoryService.createServiceRoot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.createPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.createPersistentService(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.createDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
============= end nested exception, level (3) ===========
Cleanup action completed
Tue Apr 12 10:27:02 EDT 2016 Thread[C3P0PooledConnectionPoolManager[identityToken->zoy01n9g30k6nzbrocp0|3d9e1a]-HelperThread-#0,5,main] Cleanup action starting
java.sql.SQLException: Failed to start database '/usr/share/tomcat6/.chemaxon/app_db' with class loader WebappClassLoader
context: /webservices
delegate: false
repositories:
/WEB-INF/classes/
----------> Parent Classloader:
org.apache.catalina.loader.StandardClassLoader@ad9418
, see the next exception for details.
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Caused by: java.sql.SQLException: Failed to start database '/usr/share/tomcat6/.chemaxon/app_db' with class loader WebappClassLoader
context: /webservices
delegate: false
repositories:
/WEB-INF/classes/
----------> Parent Classloader:
org.apache.catalina.loader.StandardClassLoader@ad9418
, see the next exception for details.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
... 19 more
Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database /usr/share/tomcat6/.chemaxon/app_db.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
... 16 more
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database /usr/share/tomcat6/.chemaxon/app_db.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.privGetJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.getJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source)
... 16 more
============= begin nested exception, level (1) ===========
java.sql.SQLException: Another instance of Derby may have already booted the database /usr/share/tomcat6/.chemaxon/app_db.
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database /usr/share/tomcat6/.chemaxon/app_db.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
... 18 more
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database /usr/share/tomcat6/.chemaxon/app_db.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.privGetJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.getJBMSLockOnDB(Unknown Source)
at org.apache.derby.impl.store.raw.data.BaseDataFileFactory.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.raw.RawStore.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source)
... 16 more
============= end nested exception, level (1) ===========
============= begin nested exception, level (2) ===========
java.sql.SQLException: Another instance of Derby may have already booted the database /usr/share/tomcat6/.chemaxon/app_db.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection40.<init>(Unknown Source)
at org.apache.derby.jdbc.Driver40.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.Driver20.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at com.mchange.v2.c3p0.DriverManagerDataSource.getConnection(DriverManagerDataSource.java:175)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:220)
at com.mchange.v2.c3p0.WrapperConnectionPoolDataSource.getPooledConnection(WrapperConnectionPoolDataSource.java:206)
at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool$1PooledConnectionResourcePoolManager.acquireResource(C3P0PooledConnectionPool.java:203)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquire(BasicResourcePool.java:1138)
at com.mchange.v2.resourcepool.BasicResourcePool.doAcquireAndDecrementPendingAcquiresWithinLockOnSuccess(BasicResourcePool.java:1125)
at com.mchange.v2.resourcepool.BasicResourcePool.access$700(BasicResourcePool.java:44)
at com.mchange.v2.resourcepool.BasicResourcePool$ScatteredAcquireTask.run(BasicResourcePool.java:1870)
at com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:696)
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database /usr/share/tomcat6/.chemaxon/app_db.

ChemAxon 13811e1703

25-04-2016 06:53:13

Hi Bobgr,

 It seems the application database is corrupted. try to remove the directory on path:


/usr/share/tomcat6/.chemaxon/app_db

Regards,
Peter