SVG Issue with Batik

Hi,

I'm using the newest version of JChem web services (5.11.4) and I am suddenly having an issue generating SVG files through the web service. PNG and other formats work, but I get the following message when trying to convert to SVG:

[ERROR] org/apache/batik/dom/GenericDOMImplementation

org.apache.axis2.AxisFault: org/apache/batik/dom/GenericDOMImplementation

	at org.apache.axis2.rpc.receivers.RPCMessageReceiver.invokeBusinessLogic(RPCMessageReceiver.java:158)

	at org.apache.axis2.receivers.AbstractInOutMessageReceiver.invokeBusinessLogic(AbstractInOutMessageReceiver.java:40)

	at org.apache.axis2.receivers.AbstractMessageReceiver.receive(AbstractMessageReceiver.java:100)

	at org.apache.axis2.engine.AxisEngine.receive(AxisEngine.java:176)

	at org.apache.axis2.transport.http.HTTPTransportUtils.processHTTPPostRequest(HTTPTransportUtils.java:275)

	at org.apache.axis2.transport.http.AxisServlet.doPost(AxisServlet.java:131)

	at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)

	at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)

	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)

	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

	at chemaxon.jchem.webservice.Headers.doFilter(Headers.java:31)

	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)

	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)

	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)

	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)

	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)

	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)

	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:286)

	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:845)

	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)

	at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:447)

	at java.lang.Thread.run(Thread.java:680)

Caused by: java.lang.reflect.InvocationTargetException

	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)

	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

	at java.lang.reflect.Method.invoke(Method.java:597)

	at org.apache.axis2.rpc.receivers.RPCUtil.invokeServiceClass(RPCUtil.java:194)

	at org.apache.axis2.rpc.receivers.RPCMessageReceiver.invokeBusinessLogic(RPCMessageReceiver.java:102)

	... 22 more

Caused by: java.lang.NoClassDefFoundError: org/apache/batik/dom/GenericDOMImplementation

	at chemaxon.marvin.io.formats.vectgraphics.SvgExport.createSvgGenerator(SvgExport.java:62)

	at chemaxon.marvin.io.formats.vectgraphics.SvgExport.convert(SvgExport.java:103)

	at chemaxon.formats.MolExporter.write(MolExporter.java:776)

	at chemaxon.formats.MolConverter.write(MolConverter.java:1214)

	at chemaxon.formats.MolConverter.convert0(MolConverter.java:1087)

	at chemaxon.formats.MolConverter.convert(MolConverter.java:937)

	at chemaxon.jchem.interop.InteropMiscellanious.convertBytes(InteropMiscellanious.java:766)

	at chemaxon.jchem.interop.InteropMiscellanious.convertBytes(InteropMiscellanious.java:741)

	at chemaxon.jchem.interop.InteropMiscellanious.molconvert(InteropMiscellanious.java:613)

	at chemaxon.jchem.webservice.MolConvertWS.convertSpecialInput(MolConvertWS.java:83)

	at chemaxon.jchem.webservice.MolConvertWS.convert(MolConvertWS.java:45)

	... 28 more

Caused by: java.lang.ClassNotFoundException: Class Not found : org.apache.batik.dom.GenericDOMImplementation

	at org.apache.axis2.deployment.DeploymentClassLoader.findClass(DeploymentClassLoader.java:86)

	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)

	at java.lang.ClassLoader.loadClass(ClassLoader.java:247)

	... 39 more

This is on Mac OSX 10.8.2.

Thanks,

Craig

Hi Craig,

Unfortunately this issue is caused by a missing JAR file from the official release.

We can fix this issue with the next release (5.12, due in a few weeks) or I can give you instructions to fix the issue by adding a JAR file to a specific location on the machine where JChem Web Services was installed.

If you are comfortable with doing this - or have a server administrator that can help, please let me know.

Sorry for the inconvenience,
Andras 

astracz wrote:

Hi Craig, Unfortunately this issue is caused by a missing JAR file from the official release. We can fix this issue with the next release (5.12, due in a few weeks) or I can give you instructions to fix the issue by adding a JAR file to a specific location on the machine where JChem Web Services was installed. If you are comfortable with doing this - or have a server administrator that can help, please let me know. Sorry for the inconvenience, Andras

Hi Andras,

No worries, I can wait for the fix. Thanks for you quick reply!

Craig

Hi Craig,

We are preparing a new minor release with this fix in the installer and a few other minor bugfixes. The upcoming 5.11.5 is planned to be released by Monday.

Cheers,
Andras 

astracz wrote:

Hi Craig, We are preparing a new minor release with this fix in the installer and a few other minor bugfixes. The upcoming 5.11.5 is planned to be released by Monday. Cheers, Andras

Wow, that's awesome. You guys seriously rock!

Hi Craig,

5.11.5 is out. You can download it here:

http://www.chemaxon.com/download/jchem-web-services/