Prefered IUPAC Name (hydrogen related)

User e664d5d374

18-04-2011 13:23:03

For several calculations, MarvinSketch cannot distinguish between compounds like:


OS(O)=O


O[SH2](O)=O


Both smiles generate the same PIN, unless the valence is specified for the sulfur, the same SMILES is generated.

ChemAxon e7b9408ca1

19-04-2011 18:10:04

Thanks for your report. Which name would you expect for the second compound?

User e664d5d374

21-04-2011 04:17:01

I don't know what the PIN is, all can I give is dihydrosulfurous acid as an idea. Alternatively, it could be called metasulfinic acid.

User bd69837856

24-04-2011 21:01:43

I expect the preferred organic name for that compound is something like:


dihydroxy-lambda6-sulfanone by analogy to PIN names chosen in sections like P-68.4.3.4 (iupac draft 2004)


ACD/Name and Lexichem produce dihydroxy-lambda4-sulfane oxide and dihydroxy(oxo)-lambda6-sulfane respectively which are both unambiguous names.

ChemAxon e7b9408ca1

27-04-2011 10:28:26

Thanks Daniel for the input. I agree with dihydroxy-lambda6-sulfanone. Actually, this became the generated name naturally, after fixing the false match on 'sulfurous acid'.


So this is now working in our development version, and should be released in version 5.5.1.

User e664d5d374

01-05-2011 11:07:55

Brilliant. Will this be fixed for all similiar cases, or just sulfurous acid?

ChemAxon e7b9408ca1

02-05-2011 15:11:37

It should also be fixed for other sufur-based groups: sulfinic acid and thioperoxol. If you are aware of other problematic cases, please let us know.

User e664d5d374

09-05-2011 04:04:49

I noticed that this problem is widespread, phosphorus-based groups are another example.