Latest version, history of changes

Please subscribe to this topic to get automatic notifications of releases of new versions.

Component collection version 1.3 has been released





Download:





http://www.chemaxon.com/integration/download.html





Changes:





Version 1.3, July 11, 2008





- Chemical Terms Calculator component added





- New error reporting system: more informative error text, ability to write


detailed error log to file if CHEMAXON_PP_LOG_DIR environment variable set.





- Collection recompiled for Marvin / JChem 5.1 compatibility


(while still maintaining JChem 3.2 / Marvin 4.1.2 backwards compatibility)

Component collection version 1.3.1 has been released





Download:





http://www.chemaxon.com/integration/download.html





Changes:





Version 1.3.1, October 22, 2008








- Bugfix: ChemAxon Reactor only returned the first set of products for a


given pair of reactants resulting in fewer products in certain cases.





- Bugfix: ChemAxon Calculator threw exception for inconsistent input


structures in some cases


(instead of just adding an error tag, and letting processing go on).

Component collection version 1.4 has been released





Download:





http://www.chemaxon.com/integration/download.html





Changes:





Version 1.4, November 24, 2008

Code:

- "LibMCS Clustering" component added   - "Molecule to IUPAC Name" component added   - "Molecule from IUPAC Name" component added   - "ChemAxon Reactor" component:         > New options added:             - Synthesis Code generation             - Unambiguous only (single) mode             - Output reaction mapping             - Options to ignore 3 types of reaction rules         > Bugs fixed:             - reaction output always contained all products             - premature termination with "No Server Process" message for large input sets   - Utility protocol added for displaying ChemAxon software properties

Component collection version 1.5 has been released




Download:




http://www.chemaxon.com/integration/download.html

 

Changes:

Version 1.5, May 29, 2009
  -------------------------------
 
  - Requires JChem / Marvin 5.1.3 or newer
 
  - New components:
 
        > "ChemAxon MolConverter"
       
        > "ChemAxon Tautomerization"
       
        > "ChemAxon Markush Enumeration"
          
  - "Chemaxon Reactor" component can now skip errors
 
  - Error reporting was further improved. Error log always present at a default location.
 
  - "Show ChemAxon Environement" component improved (displays info in Notepad).

Component collection version 1.5.1 has been released




Download:




http://www.chemaxon.com/integration/download.html

 

Changes:

Version 1.5.1, June 9, 2009
  -------------------------------
 
  - JChemSearch component returns result structures faster after search

Component collection version 1.6 has been released




Download:




http://www.chemaxon.com/integration/download.html

 

Changes:

 Version 1.6, August 31, 2009
  -----------------------------------
 
  - "ChemAxon 3D Conformers" component added

Component collection version 1.6.1 has been released  Download:  http://www.chemaxon.com/integration/download.html   Changes:  Version 1.6.1, January 8, 2010   -------------------------------   - "ChemAxon Reactor" : keeps properties of reactants in products (option added)   - "ChemAxon MolConverter" : keeps properties also in file output

 

Component collection version 1.6.2 has been released 

Download: 

http://www.chemaxon.com/integration/download.html

 

Changes:

 Version 1.6.2, February 18, 2010

  -------------------------------

  - "ChemAxon MolConverter": 

      > able to use ByteArray input as ASCII source (e.g. obtained from cd_structure field)

      > threw exception on properties not convertible to String ot StringArray (bugfix)

After noticing some incompatibilities, version 1.6.2 was rebuilt to support JChem 5.3.x versions better.

Affected components:

- MolConverter

- Reactor

- Create JChem Base Table

- JChemSearch

The new version (1.6.2_j53) is available beside the old version at the usual download page:

 https://www.chemaxon.com/download/integration-tools/

 

 

Component collection version 1.8.1 has been released 

Download: 

https://www.chemaxon.com/download/integration-tools/

 

Changes:

 

Version 1.8.1, January 17, 2011

  -----------------------------

  - Restored Pipeline Pilot 7.5 compatibility

  

  - "ChemAxon Reactor"  

        > Fused reaction output option added

        > Reactant ratio option added

        > "ChemAxon_Last_Record_Tag" temporary property wasn't removed (bugfix)

        

  - Obsolete component "CTAB from Molecule" removed

 

 

 

Component collection version 1.9 has been released

 

Download: 

https://www.chemaxon.com/download/integration-tools/

 

Component collection version 2.0 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

 

Version 2.0, October 17, 2011

  -------------------------------

  - New component:

        > "ChemAxon Formula Search Filter"

  - "ChemAxon Reactor" component : speedup by multi-threading and more efficient reactant selection

  - "ChemAxon Structure Search Filter" : improved error handling

  - "ChemAxon Calculator" : more options for pKa data export and visualization

  - "JChemSearch" : BigDecimal return type support added for hit data retrieval

 

Component collection version 2.2 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

Version 2.2, February 18, 2012

  -------------------------------

  - Supported JChem versions:

        > 5.8.x : 5.8.0 and above

        > 5.7.x : 5.7.0 and above

  - New component:

        > "Delete from JChem Base Table"

 

Component collection version 2.3 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

 

Changes:

 

Version 2.3, March 6, 2012

    -------------------------------

    - Supported JChem versions:

          > 5.9.x : 5.9.0 and above

          > 5.8.x : 5.8.0 and above

    - "ChemAxon Document Extractor" upgraded (in 5.9 version only):

          > Optical Structure Recognition support via OSRA

          > More options and result properties

    - "Create JChem Base Table" creates the JChem property table if does not exist

    - "Connection" accepts empty login and password

 

 

Component collection version 2.3.1 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

  Version 2.3.1, March 15, 2012

      -------------------------------

      - Improved error handling in "ChemAxon Ionize Molecule at pH"

 

Component collection version 2.3.2 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

 

  Version 2.3.2, April 20, 2012

  -----------------------------

  - Improved error handling in "ChemAxon Calculator" and "Chemical Terms Calculator"

 

Component collection version 2.3.3 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

 

 

  Version 2.3.3, June 29, 2012

  -----------------------------

  - Supported JChem versions:

      > 5.10.x : 5.10.0 and above

      > 5.9.x : 5.9.0 and above

 

Component collection version 2.4 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

 

Version 2.4, October 22, 2012

  -----------------------------

 

  - Supported JChem versions:

      > 5.11.x : 5.11.0 and above

      > 5.10.x : 5.10.0 and above

 

  - Pipeline Pilot 8.0 or newer is required

 

  - New component:

      > "JChem for Excel Writer"

 

  - "ChemAxon Structure Search Filter" bugfix:

      explicit H removal was not disabled during query structure standardization

 

  - Support for binary structure formats in:

      "ChemAxon MolConverter", "ChemAxon Image From Molecule", "ChemAxon HTML Molecular Table Viewer"

 

  - Example protocols updated / fixed

 

Component collection version 2.4.1 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

Version 2.4.1, November 20, 2012

  --------------------------------

  - JChem Base "Insert" component:

      > support for binary input formats added

 

 

Component collection version 2.5 has been released

 

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

 

Version 2.5, December 25, 2012

    --------------------------------

    - New component:

        > "ChemAxon Structure Checker"

 

Component collection version 2.5.1 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

 

Version 2.5.1, March 7, 2013

  --------------------------------

  - Supported JChem versions:

      > 5.12.x : 5.12.0 and above

      > 5.11.x : 5.11.0 and above

  - "JChemSearch" component:

      > String parameter added for advanced search options

  -"ChemAxon Standardize" component:

      > Also accepts molecule source as input

 

Component collection version 2.5.2 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

  Version 2.5.2, April 16, 2013

  --------------------------------

  - "JChem for Excel Writer" component:

      > Option for controlling the relative position of the structure column

      > Bugfix: data columns did not keep order

 

Component collection version 2.6 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

 

 

Changes:

 

Version 2.6, May 23, 2013

  --------------------------------

 

  - Supported JChem versions:

        > 6.0.x : 5.0.0 and above

        > 5.12.x : 5.12.0 and above

 

  - "JChem for Excel Writer" component:

      > Option for overwrite / append behaviour

      > Options for formatting:

          - column width

          - horizontal alignment

          - text wrapping

 

  - "ChemAxon Calculator" component:

        > Option for pKa correction library file (6.0 version only)

 

    - "ChemAxon HTML Molecular Table Viewer" component:

        > Bugfix: exception in case the input contained no molecule

Component collection version 2.6.1 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

Version 2.6.1, May 30, 2013

  --------------------------------

  - "JChem for Excel Writer" component:

      > Bugfix: style setting for mixed case properties did not work

  - "ChemAxon Calculator" component:

      > Option for micro pKa calculation (6.0 version only)

Component collection version 2.6.2 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

 

Changes:

Version 2.6.2, June 6, 2013

  --------------------------------

  - "JChem for Excel Writer" component:

      > Vertical Alignment option added

Component collection version 2.6.3 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

 

Changes:

Version 2.6.3, July 29, 2013

  --------------------------------

  - Pipeline Pilot 8.5 or newer is required

  - "ChemAxon HTML Molecular Table Viewer" component:

      > Bugfix: did not work with structure source property

Component collection version 2.6.4 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

 

Changes:

  Version 2.6.4, September 29, 2013

  ---------------------------------

  - Supported JChem versions:

      > 6.1.x : 6.1.0 and above

      > 6.0.x : 6.0.0 and above

  - "LibMCS Clustering" component updated (in 6.1.x version only):

      > Uses new clustering algorithm, faster execution time

      > New atom matching options: Radicals, Isotopes

      > Clustering method options changed: please "Replace with Latest Version"

Component collection version 2.7 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

Version 2.7, January 10, 2014

  --------------------------------

  - "ChemAxon Document Extractor" upgraded (in 6.1.x version only):

      > Support for a total 3 OSR tools (CLiDE, OSRA, Imago)

      > NOTE: parameter OSRA on/off parameter removed (!),

          replaced by "OSR Tool" with multiple options

      > Several new options added: start page, end page, OSR filtering,

          OSR timeout, acronyms, OLE object conversion and more

  - "ChemAxon Document Extractor" fix:

      > Better compatibility for extraction from certain web sites

Component collection version 2.7.1 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

Version 2.7.1, February 13, 2014

  --------------------------------

  - Supported JChem versions:

      > 6.2.x : 6.2.0 and above

      > 6.1.x : 6.1.0 and above

  - "ChemAxon Document Extractor": support added for multiple File/URL input

  - "ChemAxon HTML Molecular Table Viewer": aromatization option did not work for ChemAxon image option

  - "ChemAxon HTML Molecular Table Viewer" and "ChemAxon Image from Molecule":

      Option "ChemAxon Image Options (De)aromatization" renamed to "ChemAxon Image Options Aromatization"

Component collection version 2.8 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

  Version 2.8, April 27, 2014

  --------------------------------

  - "ChemAxon Reactor" component : temporary disk space usage significantly reduced

  - "Create JChem Base Table": extra fields can be specified for table creation

  - "Delete from JChem Base Table": can accept cd_id values as input data

  - "JChemSearch" component:

    > Bugfix: cd_id values were not returned if neither molecular structure

              nor data fields were requested

Component collection version 2.8.1 has been released

Download: 

https://www.chemaxon.com/download/integration-tools/

Changes:

Version 2.8.1, May 16, 2014

  ---------------------------

  - Supported JChem versions:

      > 6.3.x : 6.3.0 and above

      > 6.2.x : 6.2.0 and above

  - "ChemAxon Calculator" component:

      > Bugfix: backward compatibility fix for pKa "Mode" option

Component collection version 2.9 has been released

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

Changes:

Version 2.9, July 10, 2014

  ---------------------------

  - New component: "JChem Table Information"

  - "Create JChem Base Table":

      > New options added: fingerprint parameters, custom standardization,

        absolute stereo, duplicate filtering, tautomer duplicate filtering

  - "Insert to JChem Table" component:

      > Duplicate filtering is table option, with override option for compatibility

  - "Delete from JChem Base Table" component:

      > Bugfix: backward compatibility fix

Component collection versions 14.7.7, 14.7.14 and 14.7.21 have been released

According to to the new weekly JChem release policy, a new version is expected for compatibility shortly following every JChem version.

Notifications will not be posted every time here, but in batches periodically, especially there were some significant changes in the component collection itself.

 

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

 

Changes:

 

  Version 14.7.7.0, July 23, 2014

  -------------------------------

  - "ChemAxon Reactor" component : "Generate Unsuccessful Reactions" option added

Component collection versions 14.7.28, 14.8.4, 14.8.11 and 14.8.18 have been released

 

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

 

Changes:

 

  Version 14.8.4.0, August 9, 2014

  --------------------------------

  - Some "Advanced" parameters were converted to normal in several

      components, so they will not behave "Hidden" in Pipeline Pilot 9.0

Dear users,

 

Due to technical reasons the latest version of the component collection (14.9.29.0) requires Pipeline Pilot 9.0 or later.

To read more and provide feedback on this please visit the following topic:

https://www.chemaxon.com/forum/ftopic13289.html 

 

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

 

History of Changes:

 

Version 14.9.29.0, October 2, 2014

  -------------------------------------

  Pipeline Pilot 9.0 or later is required.

 

  Version 14.9.22.0, September 24, 2014

  -------------------------------------

  - "ChemAxon Markush Filter" Prototype component removed, no advantage

      over "Chemaxon Chemical Terms Filter" since Pipeline Pilot 8.5

Version 14.11.3.0 has been released

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

 

Changes:

 

Version 14.11.03.0, November 5, 2014

  ------------------------------------

  - New components:

    > "JChem Cartridge Search"

    > "JChem Cartridge Information"

 

  - "JChemSearch" and "ChemAxon Structure Search Filter" components:

    > New "Default" Vague Bond Level option corresponding to new default Level 1 in JChem.

    > New "Stereo Search" option "Enantiomer Search", other stereo options renamed

    > Bugfix for "Stereo Search", "Charge Matching", "Isotope Matching", "Radical Matching":

      The "Default" option was not incorrect default for "Duplicate" search type,

      as non-specific query could match specific targets.

      New "Default" option changes behavior to Exact matching in case of "Duplicate" search.

 

    NOTE: Please update usages of "JChemSearch" and "ChemAxon Structure Search Filter"

          components by right-click and "Replace with Latest Version"

Version 14.11.17.0 has been released

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

 

Changes:

  Version 14.11.17.0, November 20, 2014

  -------------------------------------

  - External documentation links updated due to ChemAxon website changes.

  - "Create JChem Base Table" bugfix: default fingerprint parameters were

    incorrect for Reaction and Markush table types.

 

Version 14.12.8.0 has been released

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

 

Changes:

 

  Version 14.12.8.0, December 10, 2014

  ------------------------------------

  - "ChemAxon MolConverter" bugfix: file input property selection was not effective in case of file output

  - "ChemAxon Structure Checker":

    > "Ignore OCR Errors" option removed in Line with JChem changes as separate option.

      Use the OCR checker("ocr") in the configuration instead.

    > Bugfix: Structures with no remaining issues were not fixed properly

    > Bugfix: Fixes are always executed for checkers with fix mode "Ask" (e.g. action strings)

 

Version 15.1.5.0, January 8, 2015
---------------------------------

- "JChemSearch", "JChem Cartridge Search":
  "Remove Unused R-group Definitions" option added, unused groups no longer removed by default
- "Insert to JChem Table" : rejected empty structures no longer considered as an "error"
  (i.e. no error message, does not affect "Halt on Error" option)
- "JChemSearch" bugfix: dissimilarity values were not returned
- "JChem Cartridge Search" bugfixes:
    > Filter Query caused exception in certain cases
    > removed unused (ineffective) option "Ordering"
- "Create JChem Base Table" bugfix : relative path for custom Standardizer
  configuration file was not resolved properly


Version 14.12.15.0, December 18, 2014
-------------------------------------

- "ChemAxon HTML Molecular Table Viewer": "Display R-Logic" option added
- "ChemAxon Image from Molecule": "Display R-Logic" option added
- "ChemAxon Structure Search Filter"
  > Bugfix: ineffective "Markush Hit Representation" option removed.
    Markush search is not supported by this component, please use the JChemSearch component.
  > Bugfix: illegal default value for Tautomer Search removed

 

Download: 

http://www.chemaxon.com/download/pipeline-pilot-components/

 

Version 15.1.26.0, January 29, 2015
-----------------------------------

- New component: "JChem for Excel Reader"

- Component "ChemAxon Fragmenter" removed (discontinued product)


Version 15.1.12.0, January 13, 2015
-----------------------------------

- JChem Cartridge components: backwards compatibility tested and set to minimum version 6.1.0
- "ChemAxon Standardize" bugfixes:
  > Did not work with configuration string and configuration file (only with simple actions)
  > Relative path for custom Standardizer configuration file was not resolved properly
  > Order changed for simple actions: Clean 2D and 3D moved to the end of list, Dearomatize moved up

Version 15.5.18.0, May 20, 2015
-------------------------------

- "JChem for Excel Writer" component:
  > Conditional Formatting Expression option added
  > NOTE: became subprotocol, GUID changed


Version 15.3.9.0, March 13, 2015
--------------------------------

- Configuration file "chemaxon.conf" file instead of
  environment variables for global settings:
  > license location
  > log directory
  > OSR tools
- Default log directory changed to "logs" directory inside package

Version 15.9.7.0, September 10, 2015
------------------------------------

- "ChemAxon Document Extractor":
  > CAS lookup default changed to off (bugfix),
     but extra interactive warning of web service usage was removed
  > Options added to enable/disable systematic and common names; elements, ions and groups
  > Options added to retrieve the context of hits
  > Document section information (for USPTO XML patents)


Version 15.8.24.0, August 26, 2015
----------------------------------

JChem Cartridge Search bugfix:
  - "ORA-01000: maximum open cursors exceeded" for larger result sets fixed

Version 15.9.21.0, September 24, 2015
-------------------------------------

- "JChem Cartridge Search"
  > Retrieval of hits is faster in most cases
  > Coloring and alignment is now off by default
  > Bugfix: in version 15.9.14.0 incorrect vague bond level was applied
    for previous cartridge versions (Level 1 instead of Half)

Version 15.11.16.0, November 26, 2015
-------------------------------------

- New component: "Marvin JS"


Version 15.9.28.0, September 30, 2015
-------------------------------------

- Error reporting and logging has been improved

Version 16.1.25.0, February 5, 2016
-----------------------------------

- "Marvin JS" component:
  > Web services URL have to be set centrally in chemaxon.conf, GUI options removed.
  > Option for embedded or popup mode
  > Multiple instances per form supported

Version 16.2.15.0, February 20, 2016
------------------------------------

- "Drop JChem Base Table" : Added "Ignore Missing Table" option

- "Molecule from IUPAC Name (ChemAxon)" renamed to "ChemAxon Name to Structure"

- "Molecule to IUPAC Name (ChemAxon)"
  > Renamed to "ChemAxon Structure to Name"
  > Added option to generate traditional names
  > "Z" atoms treated as attachment points (not as carbon)

Version 16.3.21.0, March 23, 2016
---------------------------------

- The default Vague Bond Level has changed for "JChemSearch", "JChem Cartridge Search"
    and "ChemAxon Structure Search Filter" components according to JChem changes:
  > Vague bond level "Default" (Level 1) option renamed to "Ligands and bridging bonds of aromatic rings"
  > The new default vague bond level is "Ambiguous aromaticity 5 membered rings" (Level Half)

- "ChemAxon Tautomerization"
  > "Generic Tautomer" option removed
  > New options added: normal tautomers, protect ester groups, ring-chain tautomers


Version 16.2.22.0, February 26, 2016
------------------------------------

- "ChemAxon Structure to Name" : added option to generate CAS numbers

Version 16.3.28.0, April 4, 2016
--------------------------------

- New components for compound registration:
    > "Registration Connection"
    > "Registration Auto Register"
    > "Registration Get Structure by ID"
    > "Registration Structure Search"

Version 16.4.18.0, April 20, 2016
---------------------------------

- "ChemAxon Name to Structure" : added option to allow CAS lookup by web service,
    new default is disabled

Version 16.5.23.0, May 25, 2016
-------------------------------

- New component: "JChem PSQL Cartridge Search"

Version 16.5.30.0, May 31, 2016
-------------------------------

- New component: "MarvinSketch Applet":
  Completely re-written component, earlier prototypes removed.

Version 16.6.6.0, June 7, 2016
------------------------------

- New options for "JChemSearch" and "JChem Oracle Cartridge Search":
  > Homology Narrow Translation
  > Homology Broad Translation

- "MolConverter" bugfix: exception if "Keep Properties" parameter is used

Version 16.6.20.0, June 21, 2016
--------------------------------

- "JChem for Excel Writer" bugfix: exception when conditional formatting was missing fixed

Version 16.8.15.0, August 16, 2016
----------------------------------

- Marvin JS is now included as integral version of the package for simplified installation

- Upgraded and simplified installation instructions

- "ChemAxon HTML Molecular Table Viewer" bugfix: did not find applet if it was selected for pop-up

Version 16.9.5.0, September 7, 2016
-----------------------------------

- "Chemical Terms Calculator" : molecule type results are allowed

Version 16.10.3.0, October 5, 2016
----------------------------------

- New components for Compliance Checker integration:
  > "Compliance Checker"
  > "Compliance Checker Categories"

Version 16.10.24.0, October 26, 2016
------------------------------------

- New component: "JChem Web Services Search"

Version 16.12.5.0, December 8, 2016
-----------------------------------

- "ChemAxon Molecular Table Viewer" component removed (obsolete)

Version 17.1.2.0, January 3, 2017
---------------------------------

- "Marvin JS" component: compatibility fix for newer FireFox versions

Version 17.1.9.0, January 14, 2017
----------------------------------

- New components:
  > "JChem for Office Reader"
  > "JChem for Office Writer"

Version 17.1.30.0, February 4, 2017
-----------------------------------

- "JChem for Office Writer", "JChem for Office Reader":
  regular page breaks are exported and recognized for Word documents from now on.

The forum is in archive mode.

For the latest history of changes please see:

https://docs.chemaxon.com/display/docs/Pipeline+Pilot+Components+History+of+Changes

Version 17.2.13.0, February 15, 2017
------------------------------------

- Minimum required Pipeline Pilot version : 9.2

- Minimum required Internet Explorer version : 11

- Bugfix: JVM crash in certain cases during error reporting ("No server process") fixed.