Error generating IUPAC Name when importing SDFile

Hello,





I have some errors like the following one when importing an SDFILE:





Error in molecule 2377


chemaxon.jchem.db.ChemicalTermsUpdateHandlerException: Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL


_NAME: Error while evaluating expression:


traditionalName()


Timeout after 1s while computing name


Timeout after 1s while computing name, expression: traditionalName()


at chemaxon.jchem.db.UpdateHandler.calcChemTermColValues(UpdateHandler.java:1349)


at chemaxon.jchem.db.UpdateHandler.init(UpdateHandler.java:1026)


at chemaxon.jchem.db.UpdateHandler.createRowData(UpdateHandler.java:2815)


at chemaxon.jchem.db.UpdateHandler.createRowData(UpdateHandler.java:2795)


at chemaxon.jchem.db.FileToSQLHandler$ProcessingThread.run(FileToSQLHandler.java:234)





Thank you.

Hallo,





This problem has been fixed in Marvin 4.1.11. JChem 3.2.9 includes Marvin 4.1.11. Upgrading to JChem 3.2.9 should solve the problem.





Thanks


Peter

Hi,





I have two structure tables with the same data, but the second one has two "Chemical Terms" for IUPAC Naming





The first one took 1 hour to regenerate, but the second one had been upgrading for more than 24 hours, and hadn't finished yet. Is this the expected performance?





I also caused lots of errors for most of the IUPAC Names generation. Following there's an excerpt:





Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Name generation failed


Name generation failed, expression: traditionalName()


Error with Chemical Terms evaluation for column IUPAC_NAME: Error while evaluating expression:


name()


Name generation failed


Name generation failed, expression: name()


Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Name generation failed


Name generation failed, expression: traditionalName()


Error with Chemical Terms evaluation for column IUPAC_NAME: Error while evaluating expression:


name()


Name generation failed


Name generation failed, expression: name()


Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Name generation failed


Name generation failed, expression: traditionalName()


Error with Chemical Terms evaluation for column IUPAC_NAME: Error while evaluating expression:


name()


Name generation failed


Name generation failed, expression: name()


Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Name generation failed


Name generation failed, expression: traditionalName()


Error with Chemical Terms evaluation for column IUPAC_NAME: Error while evaluating expression:


name()


Name generation failed


Name generation failed, expression: name()


Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Name generation failed


Name generation failed, expression: traditionalName()


Error with Chemical Terms evaluation for column IUPAC_NAME: Error while evaluating expression:


name()


Name generation failed


Name generation failed, expression: name()


Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Name generation failed


Name generation failed, expression: traditionalName()


Error with Chemical Terms evaluation for column IUPAC_NAME: Error while evaluating expression:


name()


Name generation failed


Name generation failed, expression: name()


Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Name generation failed


Name generation failed, expression: traditionalName()


Error with Chemical Terms evaluation for column IUPAC_NAME: Error while evaluating expression:


name()


Name generation failed


Name generation failed, expression: name()


Error with Chemical Terms evaluation for column IUPAC_TRADITIONAL_NAME: Error while evaluating expression:


traditionalName()


Timeout after 60s while computing name


Timeout after 60s while computing name, expression: traditionalName()





Thank you for your help.

Thank you for reporting this problem. We have started to investigate it and will get back to you as soon as we have some relevant findings.





Thanks


Peter