User a54c3bae2e
14-10-2015 04:43:59
there is no problem with Marvin and Jchem, but with InstantJchem,
how to fix it? thanks
error log:
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00002b6bc8063be0, pid=4996, tid=47741314008832
#
# JRE version: 7.0_25-b15
# Java VM: Java HotSpot(TM) 64-Bit Server VM (23.25-b01 mixed mode linux-amd64 compressed oops)
# Problematic frame:
# C 0x00002b6bc8063be0
[error occurred during error reporting (printing problematic frame), id 0xb]
# Core dump written. Default location: /home/hp/ChemAxon/InstantJChem/bin/core or core.4996
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
#
--------------- T H R E A D ---------------
Current thread is native thread
siginfo:si_signo=SIGSEGV: si_errno=0, si_code=2 (SEGV_ACCERR), si_addr=0x00002b6bc8063be0
Registers:
RAX=0x0000000000000001, RBX=0x00002b6ba4100a38, RCX=0x00002b6ba4100700, RDX=0x00002b6bc8063be0
RSP=0x00002b6ba40ffed8, RBP=0x00002b6b344ce348, RSI=0x0000000000000001, RDI=0x00002b6ba88dcb60
R8 =0x00002b6b3824a400, R9 =0x00002b6ba80015d0, R10=0x0000000000000008, R11=0x0000000000000246
R12=0x0000000000000000, R13=0x00002b6b344ce328, R14=0x0000000000000004, R15=0x000000000000001e
RIP=0x00002b6bc8063be0, EFLAGS=0x0000000000010202, CSGSFS=0x0000000000000033, ERR=0x0000000000000014
TRAPNO=0x000000000000000e
Top of Stack: (sp=0x00002b6ba40ffed8)
0x00002b6ba40ffed8: 00002b6b342bcf82 00002b6ba4100700
0x00002b6ba40ffee8: 00002b6ba4100700 0000000000000000
0x00002b6ba40ffef8: 0000000000000000 0000000000000000
0x00002b6ba40fff08: 00002b6ba41009c0 00002b6ba4100700
0x00002b6ba40fff18: 00002b6b342bd195 0000000000000000
0x00002b6ba40fff28: 00002b6ba4100700 00002b6ba4100700
0x00002b6ba40fff38: 8e946a78a94d2afe 0000000000000000
0x00002b6ba40fff48: 0000000000000000 00002b6ba41009c0
0x00002b6ba40fff58: 00002b6ba4100700 d8432267570d2afe
0x00002b6ba40fff68: d842022f0bd72afe 0000000000000000
0x00002b6ba40fff78: 0000000000000000 0000000000000000
0x00002b6ba40fff88: 0000000000000000 0000000000000000
0x00002b6ba40fff98: 0000000000000000 0000000000000000
0x00002b6ba40fffa8: 0000000000000000 00002b6ba4100700
0x00002b6ba40fffb8: 00002b6b349e8fbd 0000000000000000
0x00002b6ba40fffc8: 0000000000000000 0000000000000000
0x00002b6ba40fffd8: 0000000000000000 0000000000000000
0x00002b6ba40fffe8: 0000000000000000 0000000000000000
0x00002b6ba40ffff8: 0000000000000000 0000000000000000
0x00002b6ba4100008: 0000000000000000 0000000000000000
0x00002b6ba4100018: 0000000000000000 0000000000000000
0x00002b6ba4100028: 0000000000000000 0000000000000000
0x00002b6ba4100038: 0000000000000000 0000000000000000
0x00002b6ba4100048: 0000000000000000 0000000000000000
0x00002b6ba4100058: 0000000000000000 0000000000000000
0x00002b6ba4100068: 0000000000000000 0000000000000000
0x00002b6ba4100078: 0000000000000000 0000000000000000
0x00002b6ba4100088: 0000000000000000 0000000000000000
0x00002b6ba4100098: 0000000000000000 0000000000000000
0x00002b6ba41000a8: 0000000000000000 0000000000000000
0x00002b6ba41000b8: 0000000000000000 0000000000000000
0x00002b6ba41000c8: 0000000000000000 0000000000000000
Instructions: (pc=0x00002b6bc8063be0)
0x00002b6bc8063bc0:
[error occurred during error reporting (printing registers, top of stack, instructions near pc), id 0xb]
Register to memory mapping:
RAX=0x0000000000000001 is an unknown value
RBX=0x00002b6ba4100a38 is an unknown value
RCX=0x00002b6ba4100700 is an unknown value
RDX=0x00002b6bc8063be0 is an unknown value
RSP=0x00002b6ba40ffed8 is an unknown value
RBP=0x00002b6b344ce348: <offset 0x219348> in /lib/x86_64-linux-gnu/libpthread.so.0 at 0x00002b6b342b5000
RSI=0x0000000000000001 is an unknown value
RDI=0x00002b6ba88dcb60 is an unknown value
R8 =0x00002b6b3824a400 is an unknown value
R9 =0x00002b6ba80015d0 is an unknown value
R10=0x0000000000000008 is an unknown value
R11=0x0000000000000246 is an unknown value
R12=0x0000000000000000 is an unknown value
R13=0x00002b6b344ce328: <offset 0x219328> in /lib/x86_64-linux-gnu/libpthread.so.0 at 0x00002b6b342b5000
R14=0x0000000000000004 is an unknown value
R15=0x000000000000001e is an unknown value
Stack: [0x00002b6ba4000000,0x00002b6ba4101000], sp=0x00002b6ba40ffed8, free space=1023k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C 0x00002b6bc8063be0
[error occurred during error reporting (printing native stack), id 0xb]
--------------- P R O C E S S ---------------
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap
PSYoungGen total 101888K, used 55996K [0x00000007c1800000, 0x00000007ce420000, 0x0000000800000000)
eden space 97088K, 52% used [0x00000007c1800000,0x00000007c4a03b88,0x00000007c76d0000)
from space 4800K, 99% used [0x00000007c76d0000,0x00000007c7b7b4b8,0x00000007c7b80000)
to space 7424K, 0% used [0x00000007cdce0000,0x00000007cdce0000,0x00000007ce420000)
ParOldGen total 32768K, used 11442K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 34% used [0x0000000744800000,0x000000074532ca48,0x0000000746800000)
PSPermGen total 30656K, used 30596K [0x0000000738400000, 0x000000073a1f0000, 0x0000000744800000)
object space 30656K, 99% used [0x0000000738400000,0x000000073a1e12a8,0x000000073a1f0000)
Card table byte_map: [0x00002b6b36d72000,0x00002b6b373b1000] byte_map_base: 0x00002b6b333b0000
Polling page: 0x00002b6b340b5000
Code Cache [0x00002b6b3c000000, 0x00002b6b3c270000, 0x00002b6b3f000000)
total_blobs=1152 nmethods=627 adapters=476 free_code_cache=47101Kb largest_free_block=47792000
Compilation events (10 events):
Event: 4.890 Thread 0x00002b6b380fc800 nmethod 685 0x00002b6b3c1de650 code [0x00002b6b3c1de780, 0x00002b6b3c1de7d8]
Event: 4.926 Thread 0x00002b6b380fc800 686 java.net.URL::toExternalForm (9 bytes)
Event: 4.926 Thread 0x00002b6b380fc800 nmethod 686 0x00002b6b3c15c5d0 code [0x00002b6b3c15c720, 0x00002b6b3c15c7b8]
Event: 4.926 Thread 0x00002b6b380fc800 687 java.net.URLStreamHandler::toExternalForm (219 bytes)
Event: 4.931 Thread 0x00002b6b380fc800 nmethod 687 0x00002b6b3c1dfb50 code [0x00002b6b3c1dfd20, 0x00002b6b3c1e0130]
Event: 4.975 Thread 0x00002b6b380fc800 689 com.sun.imageio.plugins.png.PNGImageReader::decodeUpFilter (53 bytes)
Event: 4.978 Thread 0x00002b6b380fc800 nmethod 689 0x00002b6b3c1bd790 code [0x00002b6b3c1bd8c0, 0x00002b6b3c1bda58]
Event: 4.987 Thread 0x00002b6b380fc800 690 org.openide.filesystems.AbstractFileObject::getAbstractFileSystem (8 bytes)
Event: 4.988 Thread 0x00002b6b380fc800 nmethod 690 0x00002b6b3c13e750 code [0x00002b6b3c13e8a0, 0x00002b6b3c13e938]
Event: 4.989 Thread 0x00002b6b380fc800 691 ! org.netbeans.JarClassLoader$JarSource::resource (215 bytes)
GC Heap History (10 events):
Event: 1.069 GC heap before
{Heap before GC invocations=3 (full 0):
PSYoungGen total 26624K, used 26621K [0x00000007c1800000, 0x00000007c3400000, 0x0000000800000000)
eden space 24576K, 100% used [0x00000007c1800000,0x00000007c3000000,0x00000007c3000000)
from space 2048K, 99% used [0x00000007c3200000,0x00000007c33ff530,0x00000007c3400000)
to space 2048K, 0% used [0x00000007c3000000,0x00000007c3000000,0x00000007c3200000)
ParOldGen total 32768K, used 1674K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 5% used [0x0000000744800000,0x00000007449a29e8,0x0000000746800000)
PSPermGen total 21248K, used 14780K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 69% used [0x0000000738400000,0x000000073926f378,0x00000007398c0000)
Event: 1.074 GC heap after
Heap after GC invocations=3 (full 0):
PSYoungGen total 26624K, used 2045K [0x00000007c1800000, 0x00000007c4c00000, 0x0000000800000000)
eden space 24576K, 0% used [0x00000007c1800000,0x00000007c1800000,0x00000007c3000000)
from space 2048K, 99% used [0x00000007c3000000,0x00000007c31ff530,0x00000007c3200000)
to space 2048K, 0% used [0x00000007c4a00000,0x00000007c4a00000,0x00000007c4c00000)
ParOldGen total 32768K, used 2771K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 8% used [0x0000000744800000,0x0000000744ab4ed0,0x0000000746800000)
PSPermGen total 21248K, used 14780K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 69% used [0x0000000738400000,0x000000073926f378,0x00000007398c0000)
}
Event: 1.401 GC heap before
{Heap before GC invocations=4 (full 0):
PSYoungGen total 26624K, used 26621K [0x00000007c1800000, 0x00000007c4c00000, 0x0000000800000000)
eden space 24576K, 100% used [0x00000007c1800000,0x00000007c3000000,0x00000007c3000000)
from space 2048K, 99% used [0x00000007c3000000,0x00000007c31ff530,0x00000007c3200000)
to space 2048K, 0% used [0x00000007c4a00000,0x00000007c4a00000,0x00000007c4c00000)
ParOldGen total 32768K, used 2771K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 8% used [0x0000000744800000,0x0000000744ab4ed0,0x0000000746800000)
PSPermGen total 21248K, used 14908K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 70% used [0x0000000738400000,0x000000073928f2a8,0x00000007398c0000)
Event: 1.415 GC heap after
Heap after GC invocations=4 (full 0):
PSYoungGen total 51200K, used 2032K [0x00000007c1800000, 0x00000007c4c00000, 0x0000000800000000)
eden space 49152K, 0% used [0x00000007c1800000,0x00000007c1800000,0x00000007c4800000)
from space 2048K, 99% used [0x00000007c4a00000,0x00000007c4bfc2d8,0x00000007c4c00000)
to space 2048K, 0% used [0x00000007c4800000,0x00000007c4800000,0x00000007c4a00000)
ParOldGen total 32768K, used 3854K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 11% used [0x0000000744800000,0x0000000744bc3a18,0x0000000746800000)
PSPermGen total 21248K, used 14908K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 70% used [0x0000000738400000,0x000000073928f2a8,0x00000007398c0000)
}
Event: 1.582 GC heap before
{Heap before GC invocations=5 (full 0):
PSYoungGen total 51200K, used 51184K [0x00000007c1800000, 0x00000007c4c00000, 0x0000000800000000)
eden space 49152K, 100% used [0x00000007c1800000,0x00000007c4800000,0x00000007c4800000)
from space 2048K, 99% used [0x00000007c4a00000,0x00000007c4bfc2d8,0x00000007c4c00000)
to space 2048K, 0% used [0x00000007c4800000,0x00000007c4800000,0x00000007c4a00000)
ParOldGen total 32768K, used 3854K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 11% used [0x0000000744800000,0x0000000744bc3a18,0x0000000746800000)
PSPermGen total 21248K, used 15143K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 71% used [0x0000000738400000,0x00000007392c9fc8,0x00000007398c0000)
Event: 1.586 GC heap after
Heap after GC invocations=5 (full 0):
PSYoungGen total 51200K, used 2034K [0x00000007c1800000, 0x00000007c7f00000, 0x0000000800000000)
eden space 49152K, 0% used [0x00000007c1800000,0x00000007c1800000,0x00000007c4800000)
from space 2048K, 99% used [0x00000007c4800000,0x00000007c49fcae8,0x00000007c4a00000)
to space 3584K, 0% used [0x00000007c7b80000,0x00000007c7b80000,0x00000007c7f00000)
ParOldGen total 32768K, used 5374K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 16% used [0x0000000744800000,0x0000000744d3fa78,0x0000000746800000)
PSPermGen total 21248K, used 15143K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 71% used [0x0000000738400000,0x00000007392c9fc8,0x00000007398c0000)
}
Event: 1.945 GC heap before
{Heap before GC invocations=6 (full 0):
PSYoungGen total 51200K, used 51186K [0x00000007c1800000, 0x00000007c7f00000, 0x0000000800000000)
eden space 49152K, 100% used [0x00000007c1800000,0x00000007c4800000,0x00000007c4800000)
from space 2048K, 99% used [0x00000007c4800000,0x00000007c49fcae8,0x00000007c4a00000)
to space 3584K, 0% used [0x00000007c7b80000,0x00000007c7b80000,0x00000007c7f00000)
ParOldGen total 32768K, used 5374K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 16% used [0x0000000744800000,0x0000000744d3fa78,0x0000000746800000)
PSPermGen total 21248K, used 16611K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 78% used [0x0000000738400000,0x0000000739438cb0,0x00000007398c0000)
Event: 1.955 GC heap after
Heap after GC invocations=6 (full 0):
PSYoungGen total 100672K, used 3583K [0x00000007c1800000, 0x00000007c8160000, 0x0000000800000000)
eden space 97088K, 0% used [0x00000007c1800000,0x00000007c1800000,0x00000007c76d0000)
from space 3584K, 99% used [0x00000007c7b80000,0x00000007c7effe28,0x00000007c7f00000)
to space 4800K, 0% used [0x00000007c76d0000,0x00000007c76d0000,0x00000007c7b80000)
ParOldGen total 32768K, used 7147K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 21% used [0x0000000744800000,0x0000000744efac70,0x0000000746800000)
PSPermGen total 21248K, used 16611K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 78% used [0x0000000738400000,0x0000000739438cb0,0x00000007398c0000)
}
Event: 3.537 GC heap before
{Heap before GC invocations=7 (full 0):
PSYoungGen total 100672K, used 100671K [0x00000007c1800000, 0x00000007c8160000, 0x0000000800000000)
eden space 97088K, 100% used [0x00000007c1800000,0x00000007c76d0000,0x00000007c76d0000)
from space 3584K, 99% used [0x00000007c7b80000,0x00000007c7effe28,0x00000007c7f00000)
to space 4800K, 0% used [0x00000007c76d0000,0x00000007c76d0000,0x00000007c7b80000)
ParOldGen total 32768K, used 7147K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 21% used [0x0000000744800000,0x0000000744efac70,0x0000000746800000)
PSPermGen total 21248K, used 20071K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 94% used [0x0000000738400000,0x0000000739799e10,0x00000007398c0000)
Event: 3.554 GC heap after
Heap after GC invocations=7 (full 0):
PSYoungGen total 101888K, used 4781K [0x00000007c1800000, 0x00000007ce420000, 0x0000000800000000)
eden space 97088K, 0% used [0x00000007c1800000,0x00000007c1800000,0x00000007c76d0000)
from space 4800K, 99% used [0x00000007c76d0000,0x00000007c7b7b4b8,0x00000007c7b80000)
to space 7424K, 0% used [0x00000007cdce0000,0x00000007cdce0000,0x00000007ce420000)
ParOldGen total 32768K, used 11442K [0x0000000744800000, 0x0000000746800000, 0x00000007c1800000)
object space 32768K, 34% used [0x0000000744800000,0x000000074532ca48,0x0000000746800000)
PSPermGen total 21248K, used 20071K [0x0000000738400000, 0x00000007398c0000, 0x0000000744800000)
object space 21248K, 94% used [0x0000000738400000,0x0000000739799e10,0x00000007398c0000)
}
Deoptimization events (10 events):
Event: 4.874 Thread 0x00002b6ba815e000 Uncommon trap -34 fr.pc 0x00002b6b3c06eebc
Event: 4.874 Thread 0x00002b6ba815e000 Uncommon trap -34 fr.pc 0x00002b6b3c06eebc
Event: 4.892 Thread 0x00002b6b38243000 Uncommon trap -34 fr.pc 0x00002b6b3c0a199c
Event: 5.001 Thread 0x00002b6ba815e000 Uncommon trap -58 fr.pc 0x00002b6b3c2122bc
Event: 5.002 Thread 0x00002b6b38249000 Uncommon trap -83 fr.pc 0x00002b6b3c17a7e8
Event: 5.002 Thread 0x00002b6b38249000 Uncommon trap -83 fr.pc 0x00002b6b3c1bc8cc
Event: 5.002 Thread 0x00002b6b38249000 Uncommon trap -83 fr.pc 0x00002b6b3c196538
Event: 5.007 Thread 0x00002b6b38249000 Uncommon trap -34 fr.pc 0x00002b6b3c0a199c
Event: 5.012 Thread 0x00002b6ba815e000 Uncommon trap -83 fr.pc 0x00002b6b3c19a06c
Event: 5.019 Thread 0x00002b6ba815e000 Uncommon trap -12 fr.pc 0x00002b6b3c0922d8
Internal exceptions (10 events):
Event: 5.005 Thread 0x00002b6b38249000 Threw 0x00000007c4565320 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.005 Thread 0x00002b6b38249000 Threw 0x00000007c4567928 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.005 Thread 0x00002b6b38249000 Threw 0x00000007c45681d8 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.005 Thread 0x00002b6b38249000 Threw 0x00000007c456a278 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.005 Thread 0x00002b6b38249000 Threw 0x00000007c456ab28 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.005 Thread 0x00002b6b38249000 Threw 0x00000007c456bb68 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.005 Thread 0x00002b6b38249000 Threw 0x00000007c456d2e0 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.012 Thread 0x00002b6b38249000 Threw 0x00000007c45a8f10 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Event: 5.019 Thread 0x00002b6ba815e000 Implicit null exception at 0x00002b6b3c092000 to 0x00002b6b3c0922a6
Event: 5.030 Thread 0x00002b6ba815e000 Threw 0x00000007c48094d0 at /HUDSON/workspace/jdk7u25-2-build-linux-amd64-product/jdk7u25/hotspot/src/share/vm/prims/jvm.cpp:1235
Events (10 events):
Event: 5.035 Executing VM operation: RevokeBias
Event: 5.035 Executing VM operation: RevokeBias done
Event: 5.037 loading class 0x00002b6bb80f0f50
Event: 5.037 loading class 0x00002b6bb80f0f50 done
Event: 5.037 loading class 0x00002b6bb80f0f90
Event: 5.037 loading class 0x00002b6bb80f0f90 done
Event: 5.037 loading class 0x00002b6ba83cc690
Event: 5.038 loading class 0x00002b6ba83cc690 done
Event: 5.038 Thread 0x00002b6ba8c74800 Thread added: 0x00002b6ba8c74800
Event: 5.038 Thread 0x00002b6b38249000 Thread exited: 0x00002b6b38249000
Dynamic libraries:
00400000-00401000 r-xp 00000000 08:18 21628638 /home/hp/ChemAxon/InstantJChem/jre/bin/java
00600000-00601000 rw-p 00000000 08:18 21628638 /home/hp/ChemAxon/InstantJChem/jre/bin/java
02253000-02274000 rw-p 00000000 00:00 0 [heap]
738400000-73a1f0000 rw-p 00000000 00:00 0
73a1f0000-744800000 rw-p 00000000 00:00 0
744800000-746800000 rw-p 00000000 00:00 0
746800000-7c1800000 rw-p 00000000 00:00 0
7c1800000-7ce420000 rw-p 00000000 00:00 0
7ce420000-800000000 rw-p 00000000 00:00 0
2b6b34090000-2b6b340b3000 r-xp 00000000 08:17 6557852 /lib/x86_64-linux-gnu/ld-2.19.so
2b6b340b3000-2b6b340b5000 rw-p 00000000 00:00 0
2b6b340b5000-2b6b340b6000 r--p 00000000 00:00 0
2b6b340b6000-2b6b340b7000 rw-p 00000000 00:00 0
2b6b340b7000-2b6b340bf000 rw-s 00000000 08:17 5767257 /tmp/hsperfdata_hp/4996
2b6b340bf000-2b6b340c2000 r--s 0005f000 08:18 21629727 /home/hp/ChemAxon/InstantJChem/platform/lib/boot.jar
2b6b340c2000-2b6b340c4000 r--s 00009000 08:18 21629723 /home/hp/ChemAxon/InstantJChem/platform/lib/org-openide-modules.jar
2b6b340c4000-2b6b340cb000 r--s 000aa000 08:18 21629728 /home/hp/ChemAxon/InstantJChem/platform/lib/org-openide-util.jar
2b6b340cb000-2b6b340ce000 r--s 00048000 08:18 21629724 /home/hp/ChemAxon/InstantJChem/platform/lib/org-openide-util-lookup.jar
2b6b340ce000-2b6b340d3000 r--s 000bc000 08:18 21629797 /home/hp/ChemAxon/InstantJChem/platform/core/core.jar
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2b6ba53e9000-2b6ba53eb000 r--s 00002000 08:18 21630206 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/ant-launcher.jar
2b6ba53eb000-2b6ba5409000 r--s 001bb000 08:18 21630139 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/ant.jar
2b6ba540a000-2b6ba5419000 r--s 000d9000 08:18 21630179 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/ivy-2.2.0.jar
2b6ba5419000-2b6ba542a000 r--s 00106000 08:18 21630077 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/jai_imageio.jar
2b6ba542a000-2b6ba543e000 r--s 001bd000 08:18 21630153 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/jai_core.jar
2b6ba5447000-2b6ba544b000 r--s 00034000 08:18 21629968 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/com-im-df-api-friend.jar
2b6ba544b000-2b6ba544e000 r--s 00038000 08:18 21630017 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/com-chemaxon-ijc-db-dao-schema.jar
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2b6ba54f1000-2b6ba54f2000 r--s 00001000 08:18 21630278 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/org-acegisecurity.jar
2b6ba54f2000-2b6ba54f5000 r--s 00016000 08:18 21630242 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/spring-security-ldap-3.2.5.RELEASE.jar
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2b6ba5501000-2b6ba5502000 r--s 00004000 08:18 21630170 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/spring-security-openid-3.2.5.RELEASE.jar
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2b6ba5512000-2b6ba5515000 r--s 00020000 08:18 21630071 /home/hp/ChemAxon/InstantJChem/instantjchem/modules/ext/jsqlparser.jar
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VM Arguments:
jvm_args: -Djdk.home=/home/hp/ChemAxon/InstantJChem/jre -Dnetbeans.system_http_proxy=DIRECT -Dnetbeans.system_http_non_proxy_hosts= -Dnetbeans.dirs=./../instantjchem:./../harness:./../ide: -Dnetbeans.home=/home/hp/ChemAxon/InstantJChem/platform -Xms48m -XX:MaxPermSize=196m -Dderby.system.home=derby -Dnetbeans.logger.console=true -ea -Dorg.netbeans.ProxyClassLoader.level=1000 -DuseGtk=false -Dorg.netbeans.core.TimeableEventQueue.report=86400000 -XX:+HeapDumpOnOutOfMemoryError -XX:HeapDumpPath=/home/hp/.instantjchem/14.9.1.0/var/log/heapdump.hprof
java_command: org.netbeans.Main --userdir /home/hp/.instantjchem/14.9.1.0 --branding instantjchem --branding instantjchem
Launcher Type: SUN_STANDARD
Environment Variables:
PATH=/bin:/home/hp/vmd-1.9.1/bin:/home/hp/Downloads/ccp4-6.5/bin:/home/hp/Downloads:/home/hp/Downloads/xdsapp2.0:/home/hp/Downloads/xds/XDS-INTEL64_Linux_x86_64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/hp/ChemAxon/InstantJchem/bin:/usr/mpich2/bin:/home/hp/Downloads/openmpi-1.6.5/bin:/home/hp/Downloads/rosetta_2014.35.57232_bundle/main/source/bin:/home/hp/amber12/bin:/home/hp/dock6/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/hp/ChemAxon/InstantJchem/bin:/usr/mpich2/bin:/home/hp/Downloads/openmpi-1.6.5/bin:/home/hp/Downloads/rosetta_2014.35.57232_bundle/main/source/bin:/home/hp/amber12/bin
USERNAME=hp
LD_LIBRARY_PATH=:/home/hp/Downloads/openmpi-1.6.5/lib
SHELL=/bin/bash
DISPLAY=:0
Signal Handlers:
SIGSEGV: [libjvm.so+0x8a26a0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGBUS: [libjvm.so+0x8a26a0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGFPE: [libjvm.so+0x73f3d0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGPIPE: [libjvm.so+0x73f3d0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGXFSZ: [libjvm.so+0x73f3d0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGILL: [libjvm.so+0x73f3d0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGUSR2: [libjvm.so+0x73ed20], sa_mask[0]=0x00000000, sa_flags=0x10000004
SIGHUP: [libjvm.so+0x7410b0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGINT: SIG_IGN, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGTERM: [libjvm.so+0x7410b0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGQUIT: [libjvm.so+0x7410b0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
--------------- S Y S T E M ---------------
OS:jessie/sid
uname:Linux 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10 19:11:08 UTC 2014 x86_64
libc:glibc 2.19 NPTL 2.19
rlimit: STACK infinity, CORE infinity, NPROC 95738, NOFILE 4096, AS infinity
load average:0.41 0.39 0.33
/proc/meminfo:
MemTotal: 12285528 kB
MemFree: 702316 kB
Buffers: 2320916 kB
Cached: 6011092 kB
SwapCached: 186096 kB
Active: 5356492 kB
Inactive: 5538732 kB
Active(anon): 1542660 kB
Inactive(anon): 1104832 kB
Active(file): 3813832 kB
Inactive(file): 4433900 kB
Unevictable: 172 kB
Mlocked: 172 kB
SwapTotal: 97654780 kB
SwapFree: 97045628 kB
Dirty: 4596 kB
Writeback: 0 kB
AnonPages: 2456936 kB
Mapped: 299992 kB
Shmem: 84272 kB
Slab: 413840 kB
SReclaimable: 347172 kB
SUnreclaim: 66668 kB
KernelStack: 6424 kB
PageTables: 52372 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 103797544 kB
Committed_AS: 8173880 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 304228 kB
VmallocChunk: 34352914208 kB
HardwareCorrupted: 0 kB
AnonHugePages: 851968 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 110228 kB
DirectMap2M: 5115904 kB
DirectMap1G: 7340032 kB
CPU:total 12 (6 cores per cpu, 2 threads per core) family 6 model 44 stepping 2, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, ht, tsc, tscinvbit, tscinv
/proc/cpuinfo:
processor : 0
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 2527.000
cache size : 12288 KB
physical id : 0
siblings : 6
core id : 0
cpu cores : 6
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.83
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 1
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 1596.000
cache size : 12288 KB
physical id : 0
siblings : 6
core id : 1
cpu cores : 6
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.83
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 2
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 2661.000
cache size : 12288 KB
physical id : 0
siblings : 6
core id : 2
cpu cores : 6
apicid : 4
initial apicid : 4
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.83
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 3
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 1596.000
cache size : 12288 KB
physical id : 0
siblings : 6
core id : 8
cpu cores : 6
apicid : 16
initial apicid : 16
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.83
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 4
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 1596.000
cache size : 12288 KB
physical id : 0
siblings : 6
core id : 9
cpu cores : 6
apicid : 18
initial apicid : 18
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.83
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 5
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 1596.000
cache size : 12288 KB
physical id : 0
siblings : 6
core id : 10
cpu cores : 6
apicid : 20
initial apicid : 20
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.83
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 6
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 2661.000
cache size : 12288 KB
physical id : 1
siblings : 6
core id : 0
cpu cores : 6
apicid : 32
initial apicid : 32
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 7
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 2661.000
cache size : 12288 KB
physical id : 1
siblings : 6
core id : 1
cpu cores : 6
apicid : 34
initial apicid : 34
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 8
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 2661.000
cache size : 12288 KB
physical id : 1
siblings : 6
core id : 2
cpu cores : 6
apicid : 36
initial apicid : 36
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 9
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 1596.000
cache size : 12288 KB
physical id : 1
siblings : 6
core id : 8
cpu cores : 6
apicid : 48
initial apicid : 48
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 10
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 2527.000
cache size : 12288 KB
physical id : 1
siblings : 6
core id : 9
cpu cores : 6
apicid : 50
initial apicid : 50
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
processor : 11
vendor_id : GenuineIntel
cpu family : 6
model : 44
model name : Intel(R) Xeon(R) CPU X5650 @ 2.67GHz
stepping : 2
microcode : 0x13
cpu MHz : 1596.000
cache size : 12288 KB
physical id : 1
siblings : 6
core id : 10
cpu cores : 6
apicid : 52
initial apicid : 52
fpu : yes
fpu_exception : yes
cpuid level : 11
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm ida arat epb dtherm tpr_shadow vnmi flexpriority ept vpid
bogomips : 5319.90
clflush size : 64
cache_alignment : 64
address sizes : 40 bits physical, 48 bits virtual
power management:
Memory: 4k page, physical 12285528k(702316k free), swap 97654780k(97045628k free)
vm_info: Java HotSpot(TM) 64-Bit Server VM (23.25-b01) for linux-amd64 JRE (1.7.0_25-b15), built on Jun 5 2013 20:48:36 by "java_re" with gcc 4.3.0 20080428 (Red Hat 4.3.0-8)
time: Wed Oct 14 12:33:09 2015
elapsed time: 5 seconds