Exporting subset data

User 4fe72f6657

15-07-2015 05:13:24


I exported subset data (process is below), but exported data was all.

I want to know the way of exporting subset data.

Best regards.


・subset data : {text filed}  =  "-" (on query builder) -> # of records about 1,600( / about 17,000)

・exporting process:

 - structure table > right click > export to file > (select sdf format) > ...


・IJC version


Instant JChem Version: (build: 201506300743-02f6061f9e7e)
JChem Version: (build date: 2015-06-29, version ID:
JChem Table Version: 15030900
Marvin Version: (build date: 2015-06-29)
Java: 1.7.0_25; Java HotSpot(TM) Client VM 23.25-b01
System: Windows 7 version 6.1 running on x86; MS932; ja_JP (instantjchem)
NetBeans build: a903faa1d680-ijc-patched-9


ChemAxon 49d153c1b2

15-07-2015 08:06:42


unfortunately this works for me in the very same version of IJC. The workflow you've described should work.

Please verify:

1) That you're really exporting from entity you've done your search in

2) That the query finished correctly and desired number of hits is shown in the toolbar between "Goto previous/next row" buttons

3) Please check the attached screenshot to verify we're attempting the same

4) Please send us the log file content (from IJC's menu: View | InstantJChem log file)

User 4fe72f6657

15-07-2015 08:44:57


Thank you for your response.

I attach the reporting information.

ChemAxon 26d92e5dcd

15-07-2015 09:09:55


thank you for additional information. Now it is clear what the problem is. You have a query with given number of hits you want to export, but during the export instead of this subset, whole database content is exported. In this case, it is a known regression problem, which is fixed and will be available in next week's release (

As it is a regression, you can either wait for the fix and update, or downgrade your IJC several versions back, where the problem is not present (

I am sorry for the inconvenience.

Wishing all the best