select jc_evaluate_x('Br.C(F)(N)C','chemTerms:stereoisomer(0)') from dual;
gives me this result: C[C@@H](N)F
The output has lost the Br salt. I think the output should retain ALL the atoms of the input. Is there some option I need to use to do this?
Stereoisomer calculation returns the stereoisomers of the largest fragment only. The reason of this is to avoid generating the combinations of multiple stereoisomers.
We will consider to introduce an option for returning the stereoisomers of all fragments.