evaluator index out of bound (max elements 1000)

Hi,


I use a evaluator schema with more than 1000 elements and get the following errror: The reason is I don't want to use the API code because the


evaluator is quite comfortable. However I know how to use the API (with simple code).





Just an example from SMARTS





array(


matchCount("[OH1]

"),


.. 10k elements


matchcount("C(

)(

)(

)

"))





use as evaluate -e test.xml "CCC"





JCHEM Version is 4.1.13


Cheers


Tobias








1000


at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:477)


at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)


at chemaxon.jep.Evaluator.main(Evaluator.java:868)


Error 1:


java.lang.ArrayIndexOutOfBoundsException: 1000


at chemaxon.nfunk.jep.util.OptStack.push(OptStack.java:29)


at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:423)


at chemaxon.nfunk.jep.ASTConstant.jjtAccept(ASTConstant.java:42)


at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)


at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)


at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)


at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)


at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)


at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)


at chemaxon.nfunk.jep.EvaluatorVisitor.getValue(EvaluatorVisitor.java:156)


at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:470)


at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)


at chemaxon.jep.Evaluator.main(Evaluator.java:868)


Error 2:


ERRORS:


Error 1:


1000


------------------------------


TRACES:


chemaxon.nfunk.jep.ParseException:


1000


at chemaxon.nfunk.jep.EvaluatorVisitor.getValue(EvaluatorVisitor.java:160)


at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:470)


at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)


at chemaxon.jep.Evaluator.main(Evaluator.java:868)


Error 1:


java.lang.ArrayIndexOutOfBoundsException: 1000


at chemaxon.nfunk.jep.util.OptStack.push(OptStack.java:29)


at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:423)


at chemaxon.nfunk.jep.ASTConstant.jjtAccept(ASTConstant.java:42)


at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)


at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)


at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)


at chemaxon.nfunk.jep.SimpleNode.childrenAccept(SimpleNode.java:70)


at chemaxon.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:268)


at chemaxon.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:60)


at chemaxon.nfunk.jep.EvaluatorVisitor.getValue(EvaluatorVisitor.java:156)


at chemaxon.nfunk.jep.JEP.getValueAsObject(JEP.java:470)


at chemaxon.jep.ChemJEP.evaluate(ChemJEP.java:150)


at chemaxon.jep.Evaluator.main(Evaluator.java:868)

Hi,





The exception is thrown because there is a size limitation in chemaxon.nfunk.jep.util.OptStack. It already has been fixed in JChem 5.1 (will be released soon), and we will fix it in JChem 5.0.7 too.





Regards,


Zsolt