MarvinView conformational problem

Hello








I tried to use MarvinView for the conformational





analysis. I need to identify the most stable conformer





for my molecule (see the attached file).











The software responds with the message:





Cannot run plugin: Conformers





Calculation result is not defined for query molecules.











I also failed to find the answer in Help:





“Help Contents” pooldown doesn’t respond.











I would appreciate your help.

















All the best,





Michael











Product Version: MarvinView 5.0.0





Build Date: 2008-01-09





Operating System: x86 Windows XP 5.1





Java: Sun Microsystems Inc. Java 1.6.0_03





Memory: 127.1M maximum, 7.3M total, 1.0M free





Environment: Application (with administrator rights)

Hi,

shokhen wrote:

Hello I tried to use MarvinView for the conformational analysis. I need to identify the most stable conformer for my molecule (see the attached file). The software responds with the message: Cannot run plugin: Conformers Calculation result is not defined for query molecules.

Please check this topic: Calculation result is not defined for query molecules, your problem is similar to this one.


See also: PDB format description.





Unfortunately the {b} option can not guess bond types for your molecule, but we will fix this in Marvin 5.0.2 version.

Quote:

I also failed to find the answer in Help: “Help Contents” pooldown doesn’t respond.

This was a bug. It was fixed in Marvin 5.0.1.





Regards,


Zsolt