Input .mol files from a directory

Hi, I am trying to calculate protonation of a list of compounds from .mol files. 

I have the following command with works perfectly:

cxcalc -N ih majormicrospecies -H 7.3 compound.mol | cxcalc formalcharge formula

and the output is:

1, -2, compound formula (id, formal charge and formula respectively).

The problem is the input file for multiple .mol file. I have over 100 compounds in a directory. How can i read and calculate each file by providing the directory name as input? so i get a list of output file as follows:

 

1, -2, compound formula (id, formal charge and formula respectively)

2, 0, compound formula 

3, 1, compound formula

etc….

 

Many thanks in advance.

 

Dear Filmon,

You can fuse all files into an sdf with molconvert:

molconvert sdf *.mol -o molecules.sdf
cxcalc -N ih majormicrospecies -H 7.3 molecules.sdf | cxcalc formalcharge formula

Or a one-step solution:

cxcalc -N ih majormicrospecies -H 7.3 *.mol | cxcalc formalcharge formula

Best regards,
Laszlo