Export Smiles isomeric without information?

User 7fc1506f44

17-07-2012 18:32:35

I wonder how to convert this Smiles: [H] \ C1 = C (C) / CCC = C (C) CC [C @ @] 2 ([H]) C (= C) C (= O) O [C @] 12 [H] to a smile isomeric without the information in this case sMILE: [H] C1 = C (C) CCC = C (C) CCC2 ([H]) (C (= C) C (= O ) OC12 ([H]))

ChemAxon d51151248d

19-07-2012 11:23:32

Dear Patrick!

You have to use non-stereo SMILES to get the result.


To do that, copy your SMILES into MarvinSketch (with for example Ctrl + V) and then


use Edit > Source > View > SMILES > SMILES (non-stereo) to get the result.


Please also delete the spaces between the characters of the SMILES codes because  Marvin


can't recognize the structure as you pasted well.

User 7fc1506f44

20-07-2012 01:49:52










danielszisz wrote:

Dear Patrick!

You have to use non-stereo SMILES to get the result.


To do that, copy your SMILES into MarvinSketch (with for example Ctrl + V) and then


use Edit > Source > View > SMILES > SMILES (non-stereo) to get the result.


Please also delete the spaces between the characters of the SMILES codes because  Marvin


can't recognize the structure as you pasted well.



Thank you staff! I wonder if you would know how to convert using the web tools.

ChemAxon d51151248d

20-07-2012 19:54:13

Dear Patrick !


What did you mean by 'web tools' ? If you meant Marvin applets, then you can solve your problem 


the same way as with the desktop version of MarvinSketch. If you were interested in the applet, I


would recommend you the applet developer documentation, where you can use the applet.


 


http://www.chemaxon.com/marvin/examples/applets/sketch/index.html