User f05f6b8c05
09-10-2011 21:57:23
Hi,
Is it a known bug for jchem indexing to fail when the mol file starts with 'BM'?
DBD::Oracle::st execute failed: ORA-29875: failed in the execution of the ODCIINDEXINSERT routine
ORA-20101: Internal error: cannot create new instance for the osraimage importer module
ORA-06512: at "JCHEM.JCHEM_CORE_PKG", line 34
ORA-06512: at "JCHEM.JC_IDXTYPE_IM", line 781 (DBD ERROR: OCIStmtExecute) [for Statement " insert into testv (struct) values (?)" with ParamValues: :p1='BM
Mrv0541 10091117272D
12 13 0 0 0 0 999 V2000
0.1909 -1.5651 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
0.1909 -0.7401 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
etc.
Changing the start letters seems to resolve thing fine. We're using 5.6.0.1
/usr/edex_java/bin/java -jar jchem.jar
JChem version: 5.6.0.1 (revision: 148043)
Table version: 5060000 (for determining if recalculation is necessary)
Thanks for any guidance.
Cheers,
Andrew
ChemAxon aa7c50abf8
10-10-2011 08:26:55
Hi Andrew,
I've moved this topic to the visualization forum, since the problem can be reproduced using the molconvert command line tool and the attached molfile as well:
C:\Users\pkovacs\chemaxon\packages\jchem-5.6.0.1\bin>molconvert mrv C:\Users\pkovacs\chemaxon\input\nci_1.sdf
<?xml version="1.0" ?>
<cml>
C:\Users\pkovacs\chemaxon\input\nci_1.sdf: error: OSRA is not available on your computer.
(My computer is running on Windows 7 Professional.)
Peter
ChemAxon 25dcd765a3
12-10-2011 15:18:57
Hi Andrew,
We are working on the problem.
I let you know if the fix is ready.
ChemAxon 25dcd765a3
19-10-2011 10:45:27
Hi Andrew,
We have fixed the bug. The forthcoming 5.7 release (coming out soon) will contain the fix.
ChemAxon 25dcd765a3
20-10-2011 11:44:28
Hi Andrew,
We will also create a fix release for 5.6 release in 5.6.0.4 version.
ChemAxon aa7c50abf8
26-10-2011 10:38:12
User f05f6b8c05
28-10-2011 07:58:25
Thanks so much for the quick fix!