converting a structure file (sdf/smi, etc) to a peptide seq

User 48b145d3f5

15-03-2011 13:59:41

Hello,


I am trying to convert a structure file to the 1 or 3 letter format however the mview returns an error saying that the structure does not match the amino acid template. This peptide is acetilated at the N-ter, which is a pretty common peptide modification. Would it be possible to fix this issue? Is there a workaround I could use in the meantime?


Thank you.


Francesca


 

ChemAxon e500b51457

16-03-2011 10:22:59

Dear Francesca,



Could you send us a simple sdf/smi file to reproduce the problem please ?

Thanks,
Erika.