User b814ae3513
03-02-2011 13:03:37
If I create a compound with aromatic groups in Marvin Sketch Online Tryout version and save it as a pdb file, when the file is reopened, the aromatic groups are no longer shown correctly (i.e., with a double bond to one O atom). Instead, the aromatic groups now have the single-bonded C atom. Is this a bug? If not, is there a way to correct this behavior? Thank you.
P.S.: The doubles bonds are shown correctly if the file is save has .mol (Sybyl compatible file). So i think the problem is only by saving in .pdb?