5.2+: Cannot color atoms in mview tables

User 6cb834d88c

26-05-2010 14:50:51

Included with the marvin examples is marvin/examples/applets/source/atomcoloring.html.  If I create a copy of this demo and replace the referenced mol file with inline SMILES, the depiction renders with custom color 1 as expected -- but only when using JChem 5.0.07 on OS X 10.6.3.  When using JChem 5.2.06 or 5.3.3, the depiction renders with the default atom coloring scheme.


Must any additional mview_params be set when using JChem versions > 5.0, in order for 'atomSetColorN' parameter settings to have any effect?


Thanks for the help.

ChemAxon e500b51457

28-05-2010 07:18:40

Hello,

We are investigating the issue and we will get back with an answer soon.

Regards,
Erika

28-05-2010 12:16:28










mitchchapman wrote:

Included with the marvin examples is marvin/examples/applets/source/atomcoloring.html.  If I create a copy of this demo and replace the referenced mol file with inline SMILES, the depiction renders with custom color 1 as expected -- but only when using JChem 5.0.07 on OS X 10.6.3.  When using JChem 5.2.06 or 5.3.3, the depiction renders with the default atom coloring scheme.


Must any additional mview_params be set when using JChem versions > 5.0, in order for 'atomSetColorN' parameter settings to have any effect?


Thanks for the help.



yes i was having same prob with that thing

ChemAxon e500b51457

31-05-2010 11:56:19

You don't have to set any additional parameter to color the atoms.
We found the cause of the problem and we are working on the correction. We will notify you as soon as the fix is out.

Regards,
Erika