Dot-disconnected formula not working when fragment in group

User 9d72be7cd4

19-02-2009 20:46:06

We have many "salt" molecules, with K+, HCL, etc. as fragments.





In order to ease entering some of the larger substructures such as B-F3K+ we've created shortcut groups.





The structure is correct, but marvin returns a bad dot disconnected formula for any fragment that is contained in a group.





Ex.


The attached molecule should have a dot disconnected formula of:


Dot-disconnected formula =C6H7BF3N2O2.K





But, if BF3K is part of a group, Marvin gives the formula as:


Dot-disconnected formula = C6H7BF3KN2O2


Even if expanded.





If expanded and UNGROUPED, it becomes:





Dot-disconnected formula = C6H7BF3N2O2.K





Seems like a bug. Any ideas?





Our users have gotten used to using Marvin to return the correct formula, yet in all cases where a SALT or fragment is part of a group, the dot disconnected formula is not right.





Nolan M.


Frontier Scientific, Inc.

ChemAxon d76e6e95eb

24-02-2009 09:24:21

Thanks for reporting this problem, it could be reproduced. We will fix it soon (not in 5.2)

ChemAxon d76e6e95eb

26-02-2009 16:14:48

The calculation has been fixed in version 5.2 coming out in a couple of days.