User 9d72be7cd4
19-02-2009 20:46:06
We have many "salt" molecules, with K+, HCL, etc. as fragments.
In order to ease entering some of the larger substructures such as B-F3K+ we've created shortcut groups.
The structure is correct, but marvin returns a bad dot disconnected formula for any fragment that is contained in a group.
Ex.
The attached molecule should have a dot disconnected formula of:
Dot-disconnected formula =C6H7BF3N2O2.K
But, if BF3K is part of a group, Marvin gives the formula as:
Dot-disconnected formula = C6H7BF3KN2O2
Even if expanded.
If expanded and UNGROUPED, it becomes:
Dot-disconnected formula = C6H7BF3N2O2.K
Seems like a bug. Any ideas?
Our users have gotten used to using Marvin to return the correct formula, yet in all cases where a SALT or fragment is part of a group, the dot disconnected formula is not right.
Nolan M.
Frontier Scientific, Inc.
In order to ease entering some of the larger substructures such as B-F3K+ we've created shortcut groups.
The structure is correct, but marvin returns a bad dot disconnected formula for any fragment that is contained in a group.
Ex.
The attached molecule should have a dot disconnected formula of:
Dot-disconnected formula =C6H7BF3N2O2.K
But, if BF3K is part of a group, Marvin gives the formula as:
Dot-disconnected formula = C6H7BF3KN2O2
Even if expanded.
If expanded and UNGROUPED, it becomes:
Dot-disconnected formula = C6H7BF3N2O2.K
Seems like a bug. Any ideas?
Our users have gotten used to using Marvin to return the correct formula, yet in all cases where a SALT or fragment is part of a group, the dot disconnected formula is not right.
Nolan M.
Frontier Scientific, Inc.