Have you ever seen a mol file that starts with "ISIS&qu

We are creating mol files from SMILES strings using MolImporter. Sometimes we get MolFiles (without proper carriage returns) that start with ISIS.

What you mean on "without proper carriegage returns"?


If you use Molecule.toFormat(format) the EOL (end of line) characters will be platform inependent ('\n'). If you need windows specific EOLs, you have to change all '\n' to '\r\n'. In MolExporter or in MolConverter API you can specify the prefered EOL character (platform dependent vs. platform independent) for the output of the exporter. (In this case, you don't need further conversion.)

Please see my previous comment in this subject in another topic: end of line characters.