Can't find Inchi From MOL on MACOSX

Hi,





I'm trying to run the following molconvert (version 4.1.13)command on my MAC OSX 10.4.10 PPC.





>>molconvert inchi molFile.mol





However, I get the following error message:





molFile.mol:51: error: /Users/tom/.chemaxon/lib/inchi-1_0/libinchi.jnilib:


java.lang.UnsatisfiedLinkError: /Users/tom/.chemaxon/lib/inchi-1_0/libinchi.jnilib:


at java.lang.ClassLoader$NativeLibrary.load(Native Method)


at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1751)


at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1647)


at java.lang.Runtime.load0(Runtime.java:769)


at java.lang.System.load(System.java:967)


at chemaxon.marvin.modules.Inchi.install(Unknown Source)


at chemaxon.marvin.modules.Inchi.<clinit>(Unknown Source)


at chemaxon.marvin.modules.InchiExport.convert(Unknown Source)


at chemaxon.formats.MolExporter.write(Unknown Source)


at chemaxon.formats.MolConverter.write(Unknown Source)


at chemaxon.formats.MolConverter.convert0(Unknown Source)


at chemaxon.formats.MolConverter.convert(Unknown Source)


at chemaxon.formats.MolConverter.main(Unknown Source)





Does anyone know what cause this? I tried setting the LD_LIBRARY_PATH, DYLD_LIBRARY_PATH, and PATH variables, but the command still fails. The version of Marvin installed is Molecule File Converter, version 4.1.13, (C) 1999-2007 ChemAxon Ltd.





Thanks

We will check it.

Hi!





If there is another marvin version on the computer or you have just updated, maybe you are using an old verion libinchi.jnilib. In that case please delete this libinchi.jnilib file from your .chemaxon directory and run the application again.





InChI in Marvin only works with the libinchi.jnilib provided by chemaxon. Several weeks ago a similar problem occured when a user have tried to use a different one. Please do not use any other libinchi.jnilib files.





Can you tell me if this file /Users/tom/.chemaxon/lib/inchi-1_0/libinchi.jnilib exists (after you get this error message) and if not then the contents of /Users/tom/.chemaxon/, /Users/tom/.chemaxon/lib/ and /Users/tom/.chemaxon/lib/inchi-1_0/ (just the file names and if any of these missing).





Best regards,


Peter

Hi,





I've just uninstalled Marvins completely on my computer by executing the uninstall program that came packaged with the bundle install. Also, I've just manually removed the folders /Applications/ChemAxon and the ~/.chemaxon too. I completely uninstalled Marvins.





I then installed the same version of Marvins by root. After running the command:





>>molconvert inchi molFile.mol





a hidden directory (.chemaxon) was automatically created in my user home account and the same error message was reported:





wificlient-55-204:~ tom$ molconvert inchi molFile.mol


molFile.mol:51: error: /Users/tom/.chemaxon/lib/inchi-1_0/libinchi.jnilib:


java.lang.UnsatisfiedLinkError: /Users/tom/.chemaxon/lib/inchi-1_0/libinchi.jnilib:


at java.lang.ClassLoader$NativeLibrary.load(Native Method)


at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1751)


at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1647)


at java.lang.Runtime.load0(Runtime.java:769)


at java.lang.System.load(System.java:967)


at chemaxon.marvin.modules.Inchi.install(Unknown Source)


at chemaxon.marvin.modules.Inchi.<clinit>(Unknown Source)


at chemaxon.marvin.modules.InchiExport.convert(Unknown Source)


at chemaxon.formats.MolExporter.write(Unknown Source)


at chemaxon.formats.MolConverter.write(Unknown Source)


at chemaxon.formats.MolConverter.convert0(Unknown Source)


at chemaxon.formats.MolConverter.convert(Unknown Source)


at chemaxon.formats.MolConverter.main(Unknown Source)

In response to your questions eariler,





"Can you tell me if this file /Users/tom/.chemaxon/lib/inchi-1_0/libinchi.jnilib exists (after you get this error message) and if not then the contents of /Users/tom/.chemaxon/, /Users/tom/.chemaxon/lib/ and /Users/tom/.chemaxon/lib/inchi-1_0/ (just the file names and if any of these missing). "





Yes, the full path (and the contents) leading to the jni file (libinchi.jnilib) was created automatically upon executing the command that calls the inchi input parameter.





(ie. molconvert inchi molFile.mol)

I have the same problem... any solution?

Please~~

No, I don't have a solution yet. I'm still waiting for the reply from ChemAxon experts/techs.

Probably, the mentioned jnilib is not compatible with your platform.


We need more info to debug it.


We are going to keep in contact with you (in email) to discuss the details.