Clean 2D in Marvin 4.1.13

User 9852713200

11-10-2007 17:54:48

When I paste the following smiles into MarvinView/MarvinSketch, the structure always looks ugly no matter how I clean it using Marvin "clean 2D" function.





CCOC(=O)C1(CC2=CC=CC=C2C1)NC(=O)C3=CC=CC=C3N4CCNCC4





Is there any way to make it look pretty?





thanks,

ChemAxon 25dcd765a3

12-10-2007 07:39:30

We have already fixed this problem. The forthcoming Marvin 5.0 release will give the following result:

User 9852713200

12-10-2007 14:45:46

Great! How about this one? (It also looks ugly in 4.1.13)





CCOC(=O)C1(CCC1)NC(=O)C2=CC=CC=C2N3CCNCC3





Just curious about when the version 5 is going to be released? Is it still using Java JRE 1.4.2?





Thanks!

ChemAxon 25dcd765a3

12-10-2007 18:29:54

The 5.0 is coming out in autumn.





This


CCOC(=O)C1(CCC1)NC(=O)C2=CC=CC=C2N3CCNCC3


going to look like:

User 9852713200

12-10-2007 18:41:53

"Clean 2D" function now looks much better!





Version 5 you mentioned will be released in autumn. Do you have any estimated date? I cannot wait to use this version as we have a bunch of twisted structures to be fixed...





Thanks!

ChemAxon 7c2d26e5cf

16-10-2007 17:25:51

We plan to release Marvin 5.0 mid of November.

User 9852713200

16-11-2007 19:10:06

Hi,





Is the release of Marvin 5.0 still on schedule?





thanks,

ChemAxon 990acf0dec

19-11-2007 09:55:06

Yes, but we still need at least two weeks. Sorry for the inconvenience.

User 9852713200

12-12-2007 15:09:32

Hi,





I thought the latest version is version 5.0, but it's 4.1.14. Anyway, is this "clean 2D" problem fixed in the latest release?





Thanks!

ChemAxon 990acf0dec

12-12-2007 16:20:54

Hi,





No, the new clean 2D feature will be implemented only in the 5.0 version. We released the first 5.0beta yesterday; you can try this out here:





http://www.chemaxon.com/devel/marvin/index.html





The final release is scheduled to Tuesday.





Best regards,





Akos

User 9852713200

12-12-2007 17:01:56

Hi,





You mentioned that the final release date of Marvin 5.0 is Tuesday. Is it next Tuesday, Dec 19th? If so, I'll wait.





Thanks!

ChemAxon 990acf0dec

12-12-2007 17:07:07

Hi,





Yes it is the next Tuesday, but that is the 18th :)





Cheers,





Akos

User 9852713200

12-12-2007 17:17:00

You're right. :-)





One more question, we're still using Java JRE 1.4.2. Are we able to use the library (*.jar) that comes with Marvin 5.0 without any problem?





Thanks!

ChemAxon 990acf0dec

12-12-2007 17:46:49

Yes.

User 9852713200

20-12-2007 16:14:21

Hi,





Has Marvin 5.0 been released on 12/18?





thanks,

ChemAxon 7c2d26e5cf

20-12-2007 17:18:48

Not yet, but a beta version is already available:


http://www.chemaxon.com/devel/