MarvinSpace EventDispatchThread.pumpEvents during XYZ import

Hi,


I tried to import some XYZ file from the Chembiogrid and


I get an long error message, however the molecule loads fine (I guess).


See attached XYZ file and version used is:





MarvinSpace 5.0.0alpha9-metabolizer


JVM: Sun Microsystems Inc. Java 1.5.0_06


OS: x86 Windows XP 5.1





Running environment: Application





Memory: 198.5M maximum, 20.8M total, 1.5M free


Tobias














chemaxon.formats.MolFormatException: Molecule cannot be imported


at chemaxon.marvin.io.MRecordImporter.readMol(MRecordImporter.java:215)


at chemaxon.formats.MolImporter.readMol(MolImporter.java:714)


at chemaxon.formats.MolImporter.read(MolImporter.java:579)


at chemaxon.formats.MolImporter.read(MolImporter.java:546)


at chemaxon.marvin.space.MSpaceEventHandler.readMol(MSpaceEventHandler.java:335)


at chemaxon.marvin.space.MSpaceEventHandler.readMoleculeFile(MSpaceEventHandler.java:391)


at chemaxon.marvin.space.gui.JMSpaceMenuBar$21.run(JMSpaceMenuBar.java:918)


at java.awt.event.InvocationEvent.dispatch(Unknown Source)


at java.awt.EventQueue.dispatchEvent(Unknown Source)


at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.run(Unknown Source)


chemaxon.formats.MolFormatException: Molecule cannot be imported


at chemaxon.marvin.io.MRecordImporter.readMol(MRecordImporter.java:215)


at chemaxon.formats.MolImporter.readMol(MolImporter.java:714)


at chemaxon.formats.MolImporter.read(MolImporter.java:579)


at chemaxon.formats.MolImporter.read(MolImporter.java:546)


at chemaxon.marvin.space.MSpaceEventHandler.readMol(MSpaceEventHandler.java:335)


at chemaxon.marvin.space.MSpaceEventHandler.readMoleculeFile(MSpaceEventHandler.java:391)


at chemaxon.marvin.space.gui.JMSpaceMenuBar$21.run(JMSpaceMenuBar.java:918)


at java.awt.event.InvocationEvent.dispatch(Unknown Source)


at java.awt.EventQueue.dispatchEvent(Unknown Source)


at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.run(Unknown Source)


chemaxon.formats.MolFormatException: Molecule cannot be imported


at chemaxon.marvin.io.MRecordImporter.readMol(MRecordImporter.java:215)


at chemaxon.formats.MolImporter.readMol(MolImporter.java:714)


at chemaxon.formats.MolImporter.read(MolImporter.java:579)


at chemaxon.formats.MolImporter.read(MolImporter.java:546)


at chemaxon.marvin.space.MSpaceEventHandler.readMol(MSpaceEventHandler.java:335)


at chemaxon.marvin.space.MSpaceEventHandler.readMoleculeFile(MSpaceEventHandler.java:391)


at chemaxon.marvin.space.gui.JMSpaceMenuBar$21.run(JMSpaceMenuBar.java:918)


at java.awt.event.InvocationEvent.dispatch(Unknown Source)


at java.awt.EventQueue.dispatchEvent(Unknown Source)


at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.run(Unknown Source)


chemaxon.formats.MolFormatException: Molecule cannot be imported


at chemaxon.marvin.io.MRecordImporter.readMol(MRecordImporter.java:215)


at chemaxon.formats.MolImporter.readMol(MolImporter.java:714)


at chemaxon.formats.MolImporter.read(MolImporter.java:579)


at chemaxon.formats.MolImporter.read(MolImporter.java:546)


at chemaxon.marvin.space.MSpaceEventHandler.readMol(MSpaceEventHandler.java:335)


at chemaxon.marvin.space.MSpaceEventHandler.readMoleculeFile(MSpaceEventHandler.java:391)


at chemaxon.marvin.space.gui.JMSpaceMenuBar$21.run(JMSpaceMenuBar.java:918)


at java.awt.event.InvocationEvent.dispatch(Unknown Source)


at java.awt.EventQueue.dispatchEvent(Unknown Source)


at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.run(Unknown Source)


chemaxon.formats.MolFormatException: Molecule cannot be imported


at chemaxon.marvin.io.MRecordImporter.readMol(MRecordImporter.java:215)


at chemaxon.formats.MolImporter.readMol(MolImporter.java:714)


at chemaxon.formats.MolImporter.read(MolImporter.java:579)


at chemaxon.formats.MolImporter.read(MolImporter.java:546)


at chemaxon.marvin.space.MSpaceEventHandler.readMol(MSpaceEventHandler.java:335)


at chemaxon.marvin.space.MSpaceEventHandler.readMoleculeFile(MSpaceEventHandler.java:391)


at chemaxon.marvin.space.gui.JMSpaceMenuBar$21.run(JMSpaceMenuBar.java:918)


at java.awt.event.InvocationEvent.dispatch(Unknown Source)


at java.awt.EventQueue.dispatchEvent(Unknown Source)


at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.run(Unknown Source)


chemaxon.formats.MolFormatException: Molecule cannot be imported


at chemaxon.marvin.io.MRecordImporter.readMol(MRecordImporter.java:215)


at chemaxon.formats.MolImporter.readMol(MolImporter.java:714)


at chemaxon.formats.MolImporter.read(MolImporter.java:579)


at chemaxon.formats.MolImporter.read(MolImporter.java:546)


at chemaxon.marvin.space.MSpaceEventHandler.readMol(MSpaceEventHandler.java:335)


at chemaxon.marvin.space.MSpaceEventHandler.readMoleculeFile(MSpaceEventHandler.java:391)


at chemaxon.marvin.space.gui.JMSpaceMenuBar$21.run(JMSpaceMenuBar.java:918)


at java.awt.event.InvocationEvent.dispatch(Unknown Source)


at java.awt.EventQueue.dispatchEvent(Unknown Source)


at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


at java.awt.EventDispatchThread.run(Unknown Source)

Hi Tobias,





it's just because this is a test version you got with Metabolizer, but MSpace is not stable with it :)





I suggest to use the up-to-date 4.1.13 version we released 2 weeks ago.





Regards,


Judit