Make selection

hello,





I would like to know java code to select some part of the molecule and get the smiles of only the selected part.





can u please say me which method in marvin sketch make the selection of some part of the molecule.





ok then waitng for the reply


varsha

Code:

MSketchPane sketchPane; // the sketcher         int[] index; // array of the required atoms         ...         Molecule m = sketchPane.getMol();         // select required atoms         for(int i=0;i<index.length;i++) {             if(m.getAtomCount() > index[i]) {                 MolAtom atom = m.getAtom(index[i]);                 atom.setSelected(true);             }         }         // update molecule in the sketcher         sketchPane.setMol(m);         // get selection         Molecule msel = sketchPane.getSelection();         if(msel != null && !msel.isEmpty()) {             System.err.println("smiles:"+msel.toFormat("smiles"));         }