Options to MolImporter to disable parsing properties

Hi,





I am trying to read very large SDF files with ~10K molecules each with ~1000 properties. The function takes ~12 minutes to execute whereas i can process the same set of molecules in a minute if the SDF file doesnt have any properties. Is there any parameters which i can set to disable parsing the properties in SDF files?





Cibin

This is the jython code i was executing

Code:

from chemaxon.formats import * import time print time.asctime() a = [] mi = MolImporter ("d:/sdf/10000.sdf(b0)") mol = mi.read() while mol is not None:     mol = mi.read()     a.append (mol) mi.close() print time.asctime()

Quote:

Is there any parameters which i can set to disable parsing the properties in SDF files?

There is no such kind of option in Marvin.


Try to filter the property fields somehow from the input file and pass the filtered one to MolImporter.