display problems - ChemAxon Forum Archive

User 870ab5b546

10-02-2007 22:22:34

I've had three cases similar to this one today. The following file does not display at all in Marvin or MarvinView. It displays fine if I erase MPolyline o11. Any ideas why?

Code:

<?xml version="1.0" ?>

<MDocument>

<MRectangle id="o1" color="#000000">

<MPoint x="65.64250183105469" y="132.96937561035156" />

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</MRectangle>

<MEFlow id="o2" color="#000000" arcAngle="150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.25">

<MAtomSetPoint atomRefs="m1.a99" />

<MAtomSetPoint atomRefs="m1.a99 m1.a104" weights="0.25 0.75" />

</MEFlow>

<MEFlow id="o3" color="#000000" arcAngle="-150.0" headSkip="0.25"

headFlags="2" headLength="0.5" headWidth="0.4" tailSkip="0.25">

<MAtomSetPoint atomRefs="m1.a102" />

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</MEFlow>

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headSkip="0.25" headFlags="2" headLength="0.5" headWidth="0.4"

tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a76 m1.a75" />

<MAtomSetPoint atomRefs="m1.a76" />

</MEFlow>

<MEFlow id="o5" color="#000000" arcAngle="189.9" headSkip="0.15"

headFlags="2" headLength="0.5" headWidth="0.4" tailSkip="0.15">

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<MAtomSetPoint atomRefs="m1.a75 m1.a74" />

</MEFlow>

<MEFlow id="o6" color="#000000" arcAngle="248.39738999999997"

headSkip="0.15" headFlags="2" headLength="0.5" headWidth="0.4"

tailSkip="0.25">

<MAtomSetPoint atomRefs="m1.a74" />

<MAtomSetPoint atomRefs="m1.a75 m1.a74" />

</MEFlow>

<MPolyline id="o7" color="#000000" headLength="0.8" headWidth="0.5">

<MPoint x="63.573123931884766" y="98.80062866210938" />

<MRectanglePoint pos="3" rectRef="o25" />

</MPolyline>

<MPolyline id="o8" color="#000000" headLength="0.8" headWidth="0.5">

<MRectanglePoint pos="1" rectRef="o33" />

<MRectanglePoint pos="3" rectRef="o29" />

</MPolyline>

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headSkip="0.25" headLength="0.5" headWidth="0.4" tailSkip="0.15">

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<MAtomSetPoint atomRefs="m1.a100" />

</MEFlow>

<MEFlow id="o10" color="#000000" arcAngle="-150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.25">

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</MEFlow>

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<MRectanglePoint pos="6" rectRef="o0" />

</MPolyline>

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<MRectanglePoint pos="5" rectRef="o15" />

<MRectanglePoint pos="7" rectRef="o13" />

</MPolyline>

<MRectangle id="o13" color="#000000">

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</MPolyline>

<MRectangle id="o15" color="#000000">

<MPoint x="56.209999084472656" y="125.0768814086914" />

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<MPoint x="63.717498779296875" y="108.90686798095703" />

<MPoint x="56.209999084472656" y="108.90686798095703" />

</MRectangle>

<MEFlow id="o18" color="#000000" arcAngle="-254.995522631729"

headSkip="0.25" headLength="0.5" headWidth="0.4" tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a65 m1.a69" />

<MAtomSetPoint atomRefs="m1.a69" />

</MEFlow>

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headSkip="0.15" headLength="0.5" headWidth="0.4" tailSkip="0.25">

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</MEFlow>

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</MPolyline>

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tailSkip="0.15">

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tailSkip="0.15">

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</MEFlow>

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headFlags="2" headLength="0.5" headWidth="0.4" tailSkip="0.25">

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</MPolyline>

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</MRectangle>

<MEFlow id="o28" color="#000000" arcAngle="-150.0" headSkip="0.25"

headFlags="2" headLength="0.5" headWidth="0.4" tailSkip="0.25">

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</MEFlow>

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<MEFlow id="o30" color="#000000" arcAngle="-150.0" headSkip="0.25"

headFlags="2" headLength="0.5" headWidth="0.4" tailSkip="0.25">

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headSkip="0.25" headFlags="2" headLength="0.5" headWidth="0.4"

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tailSkip="0.15">

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</MRectangle>

<MChemicalStruct>

<molecule molID="m1">

<atomArray

atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18 a19 a20 a21 a22 a23 a24 a25 a26 a27 a28 a29 a30 a31 a32 a33 a34 a35 a36 a37 a38 a39 a40 a41 a42 a43 a44 a45 a46 a47 a48 a49 a50 a51 a52 a53 a54 a55 a56 a57 a58 a59 a60 a61 a62 a63 a64 a65 a66 a67 a68 a69 a70 a71 a72 a73 a74 a75 a76 a77 a78 a79 a80 a81 a82 a83 a84 a85 a86 a87 a88 a89 a90 a91 a92 a93 a94 a95 a96 a97 a98 a99 a100 a101 a102 a103 a104"

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<molecule id="sg1" role="SuperatomSgroup" title="EtO" rightName="OEt" molID="m2">

<atomArray

atomID="a105 a106 a107"

elementType="O C C"

attachmentPoint="1 0 0"

x2="67.38882454028133 68.72250366210938 70.05618278393742"

y2="106.22791910807291 105.45791910807291 106.22791910807291"

/>

<bondArray>

<bond atomRefs2="a106 a105" order="1" />

<bond atomRefs2="a107 a106" order="1" />

</bondArray>

</molecule>

<molecule id="sg2" role="SuperatomSgroup" title="EtO" rightName="OEt" molID="m3">

<atomArray

atomID="a108 a109 a110"

elementType="O C C"

attachmentPoint="1 0 0"

x2="65.99319465746885 67.32687377929688 68.6605529011249"

y2="132.02291727701822 131.25291727701824 132.02291727701822"

/>

<bondArray>

<bond atomRefs2="a109 a108" order="1" />

<bond atomRefs2="a110 a109" order="1" />

</bondArray>

</molecule>

</molecule>

</MChemicalStruct>

</MDocument>

User 870ab5b546

11-02-2007 17:36:28

Here's another example. Deleting the first two MPolylines restores the correct display behavior. I think the problem in this case is that the MPolylines don't end at appropriate places. But if they're not supposed to end there, they shouldn't be allowed to be drawn that way.

Code:

<?xml version="1.0" ?>

<MDocument>

<MPolyline id="o1" color="#000000" headLength="0.8" headWidth="0.5">

<MMidPoint lineRef="o0" />

<MAtomSetPoint atomRefs="m1.a53 m1.a54" />

</MPolyline>

<MPolyline id="o2" color="#000000" headLength="0.8" headWidth="0.5">

<MMidPoint lineRef="o0" />

<MAtomSetPoint atomRefs="m1.a53 m1.a54" />

</MPolyline>

<MPolyline id="o3" color="#000000" headLength="0.8" headWidth="0.5">

<MRectanglePoint pos="5" rectRef="o6" />

<MRectanglePoint pos="7" rectRef="o7" />

</MPolyline>

<MPolyline id="o4" color="#000000" headLength="0.8" headWidth="0.5">

<MRectanglePoint pos="5" rectRef="o11" />

<MRectanglePoint pos="7" rectRef="o5" />

</MPolyline>

<MRectangle id="o5" color="#000000">

<MPoint x="19.53874969482422" y="11.405625343322754" />

<MPoint x="31.42562484741211" y="11.405625343322754" />

<MPoint x="31.42562484741211" y="1.7806249856948853" />

<MPoint x="19.53874969482422" y="1.7806249856948853" />

</MRectangle>

<MRectangle id="o6" color="#000000">

<MPoint x="32.34000015258789" y="9.384374618530273" />

<MPoint x="41.62812423706055" y="9.384374618530273" />

<MPoint x="41.62812423706055" y="1.6843750476837158" />

<MPoint x="32.34000015258789" y="1.6843750476837158" />

</MRectangle>

<MRectangle id="o7" color="#000000">

<MPoint x="42.68687438964844" y="9.336250305175781" />

<MPoint x="50.723751068115234" y="9.336250305175781" />

<MPoint x="50.723751068115234" y="1.5881249904632568" />

<MPoint x="42.68687438964844" y="1.5881249904632568" />

</MRectangle>

<MEFlow id="o8" color="#000000" arcAngle="-150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a55 m1.a56" />

<MAtomSetPoint atomRefs="m1.a56 m1.a61" weights="0.25 0.75" />

</MEFlow>

<MEFlow id="o9" color="#000000" arcAngle="-150.0" headSkip="0.25"

headLength="0.5" headWidth="0.4" tailSkip="0.25">

<MAtomSetPoint atomRefs="m1.a65" />

<MAtomSetPoint atomRefs="m1.a48" />

</MEFlow>

<MEFlow id="o10" color="#000000" arcAngle="-150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.25">

<MAtomSetPoint atomRefs="m1.a50" />

<MAtomSetPoint atomRefs="m1.a50 m1.a46" weights="0.25 0.75" />

</MEFlow>

<MRectangle id="o11" color="#000000">

<MPoint x="1.7324999570846558" y="11.501874923706055" />

<MPoint x="17.998750686645508" y="11.501874923706055" />

<MPoint x="17.998750686645508" y="1.299375057220459" />

<MPoint x="1.7324999570846558" y="1.299375057220459" />

</MRectangle>

<MEFlow id="o12" color="#000000" arcAngle="248.39738999999997"

headSkip="0.25" headLength="0.5" headWidth="0.4" tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a31 m1.a32" />

<MAtomSetPoint atomRefs="m1.a32" />

</MEFlow>

<MRectangle id="o13" color="#000000">

<MPoint x="-14.3412504196167" y="11.213125228881836" />

<MPoint x="0.8662499785423279" y="11.213125228881836" />

<MPoint x="0.8662499785423279" y="1.3956249952316284" />

<MPoint x="-14.3412504196167" y="1.3956249952316284" />

</MRectangle>

<MEFlow id="o14" color="#000000" arcAngle="-150.0" headSkip="0.25"

headLength="0.5" headWidth="0.4" tailSkip="0.25">

<MAtomSetPoint atomRefs="m1.a14" />

<MAtomSetPoint atomRefs="m1.a15" />

</MEFlow>

<MChemicalStruct>

<molecule molID="m1">

<atomArray

atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18 a19 a20 a21 a22 a23 a24 a25 a26 a27 a28 a29 a30 a31 a32 a33 a34 a35 a36 a37 a38 a39 a40 a41 a42 a43 a44 a45 a46 a47 a48 a49 a50 a51 a52 a53 a54 a55 a56 a57 a58 a59 a60 a61 a62 a63 a64 a65 a66 a67 a68 a69 a70 a71 a72 a73 a74 a75 a76 a77 a78 a79 a80 a81"

elementType="C C C C C C C C C C C C C Cl Al Cl Cl Cl C C C C C C C C C C C C C Cl Al C C C C C C C C C C C C C C C C H H C C C C C C C C C C C C H H H H C C C C C C C C C C C C C C"

formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0"

x2="-11.214583396911621 -12.54825273795988 -12.54825273795988 -11.214583396911621 -9.880914055863363 -9.880914055863363 -8.547234934035327 -7.213555812207291 -5.879876690379255 -4.54619756855122 -3.212518446723184 -5.316197568551219 -3.7761975685512192 -1.8788393248951483 -2.502500057220459 -2.1039187277625766 -1.0149742847352938 -3.9900258297056244 3.996659368789226 2.6629900277409675 2.6629900277409675 3.996659368789226 5.3303287098374845 5.3303287098374845 6.66400783166552 7.997686953493556 9.331366075321592 10.665045197149627 9.895045197149628 11.435045197149627 11.753989640176911 13.087668762004947 14.17661320503223 13.77803187557435 15.716613205032232 14.94661320503223 22.329999923706055 20.996330582657798 20.996330582657798 22.329999923706055 23.66366926475431 23.66366926475431 24.752613707781595 25.84155815080888 26.61155815080888 27.38155815080888 26.292613707781594 28.151558150808878 28.715237272636912 29.113818602094796 30.048916394464946 33.880001068115234 32.54633172706698 32.54633172706698 33.880001068115234 35.21367040916349 35.21367040916349 36.30261485219077 37.072614852190775 38.161559295218055 38.93155929521806 40.02050373824534 39.70155929521806 24.95893458595356 25.89403237832371 27.752976821350995 29.240502593836162 40.100140624675944 44.563751220703125 43.23008187965487 43.23008187965487 44.563751220703125 45.89742056175138 45.89742056175138 47.23108990279964 47.23108990279964 48.564759243847895 48.564759243847895 46.832508573341755 45.34498280085659 48.32003434582692"

y2="5.623367373397134 4.853350432838093 3.3133165517200123 2.543299611160972 3.3133165517200123 4.853350432838093 5.623350432838093 4.853350432838093 5.623350432838093 4.853350432838093 5.623350432838093 3.5196713110100575 3.5196713110100575 4.853350432838093 8.421875 9.909400772485165 8.023293670542119 8.820456329457883 6.927898565696495 6.157881625137456 4.617847744019375 3.847830803460335 4.617847744019375 6.157881625137456 6.927881625137456 6.157881625137456 6.927881625137456 6.157881625137456 4.824202503309422 4.824202503309422 7.246826068164739 6.47682606816474 7.565770511192023 9.053296283677188 7.565770511192023 6.232091389363987 7.940659109999917 7.170642169440878 5.630608288322794 4.860591347763755 5.630608288322794 7.170642169440878 8.259586612468162 7.170642169440879 8.504321291268914 7.170642169440878 6.081697726413595 5.8369630476128425 7.940642169440878 9.428167941926043 7.170642169440878 7.5075340909264305 6.737517150367392 5.197483269249307 4.427466328690269 5.197483269249307 6.737517150367392 7.826461593394675 6.492782471566639 7.581726914593922 6.248047792765886 7.336992235793169 4.914368670937851 5.311697726413595 4.59417195392843 4.349437275127677 4.7480186045855595 3.4268428984526853 7.459408823897622 6.689391883338583 5.149358002220499 4.37934106166146 5.149358002220499 6.689391883338583 7.459408823897622 4.37934106166146 5.149358002220499 6.689391883338583 2.8918152891762947 2.4932339597184123 3.290396618634177"

/>

<bondArray>

<bond atomRefs2="a1 a2" order="1" />

<bond atomRefs2="a1 a6" order="2" />

<bond atomRefs2="a2 a3" order="2" />

<bond atomRefs2="a3 a4" order="1" />

<bond atomRefs2="a4 a5" order="2" />

<bond atomRefs2="a5 a6" order="1" />

<bond atomRefs2="a6 a7" order="1" />

<bond atomRefs2="a7 a8" order="1" />

<bond atomRefs2="a8 a9" order="1" />

<bond atomRefs2="a9 a10" order="1" />

<bond atomRefs2="a10 a11" order="1" />

<bond atomRefs2="a10 a12" order="1" />

<bond atomRefs2="a10 a13" order="1" />

<bond atomRefs2="a11 a14" order="1" />

<bond atomRefs2="a15 a16" order="1" />

<bond atomRefs2="a15 a17" order="1" />

<bond atomRefs2="a15 a18" order="1" />

<bond atomRefs2="a19 a20" order="1" />

<bond atomRefs2="a19 a24" order="2" />

<bond atomRefs2="a20 a21" order="2" />

<bond atomRefs2="a21 a22" order="1" />

<bond atomRefs2="a22 a23" order="2" />

<bond atomRefs2="a23 a24" order="1" />

<bond atomRefs2="a24 a25" order="1" />

<bond atomRefs2="a25 a26" order="1" />

<bond atomRefs2="a26 a27" order="1" />

<bond atomRefs2="a27 a28" order="1" />

<bond atomRefs2="a28 a29" order="1" />

<bond atomRefs2="a28 a30" order="1" />

<bond atomRefs2="a28 a31" order="1" />

<bond atomRefs2="a31 a32" order="1" />

<bond atomRefs2="a32 a33" order="1" />

<bond atomRefs2="a33 a34" order="1" />

<bond atomRefs2="a33 a35" order="1" />

<bond atomRefs2="a33 a36" order="1" />

<bond atomRefs2="a37 a38" order="1" />

<bond atomRefs2="a38 a39" order="2" />

<bond atomRefs2="a39 a40" order="1" />

<bond atomRefs2="a40 a41" order="2" />

<bond atomRefs2="a41 a42" order="1" />

<bond atomRefs2="a37 a42" order="2" />

<bond atomRefs2="a42 a43" order="1" />

<bond atomRefs2="a43 a44" order="1" />

<bond atomRefs2="a44 a45" order="1" />

<bond atomRefs2="a45 a46" order="1" />

<bond atomRefs2="a46 a47" order="1" />

<bond atomRefs2="a46 a48" order="1" />

<bond atomRefs2="a46 a49" order="1" />

<bond atomRefs2="a49 a50" order="1" />

<bond atomRefs2="a49 a51" order="1" />

<bond atomRefs2="a52 a53" order="1" />

<bond atomRefs2="a53 a54" order="2" />

<bond atomRefs2="a54 a55" order="1" />

<bond atomRefs2="a55 a56" order="2" />

<bond atomRefs2="a56 a57" order="1" />

<bond atomRefs2="a52 a57" order="2" />

<bond atomRefs2="a57 a58" order="1" />

<bond atomRefs2="a58 a59" order="1" />

<bond atomRefs2="a59 a60" order="1" />

<bond atomRefs2="a60 a61" order="1" />

<bond atomRefs2="a61 a62" order="1" />

<bond atomRefs2="a61 a63" order="1" />

<bond atomRefs2="a47 a64" order="1" />

<bond atomRefs2="a47 a65" order="1" />

<bond atomRefs2="a48 a66" order="1" />

<bond atomRefs2="a48 a67" order="1" />

<bond atomRefs2="a63 a68" order="1" />

<bond atomRefs2="a69 a70" order="1" />

<bond atomRefs2="a70 a71" order="2" />

<bond atomRefs2="a71 a72" order="1" />

<bond atomRefs2="a72 a73" order="2" />

<bond atomRefs2="a69 a74" order="2" />

<bond atomRefs2="a75 a74" order="1" />

<bond atomRefs2="a74 a73" order="1" />

<bond atomRefs2="a73 a76" order="1" />

<bond atomRefs2="a76 a77" order="1" />

<bond atomRefs2="a77 a78" order="1" />

<bond atomRefs2="a75 a78" order="1" />

<bond atomRefs2="a76 a79" order="1" />

<bond atomRefs2="a79 a80" order="1" />

<bond atomRefs2="a76 a81" order="1" />

</bondArray>

</molecule>

</MChemicalStruct>

</MDocument>

User 870ab5b546

11-02-2007 19:05:17

OK, one last example. Here the MPolylines appear to begin and end at rectangle edges in every case, and still there is a problem. Erasing o6 solves the problem.

I must emphasize that each of these examples was drawn with Marvin, not by editing the source code.

Code:

<?xml version="1.0" ?>

<MDocument>

<MRectangle id="o1" color="#000000">

<MPoint x="39.751251220703125" y="32.388126373291016" />

<MPoint x="55.103126525878906" y="32.388126373291016" />

<MPoint x="55.103126525878906" y="26.6612491607666" />

<MPoint x="39.751251220703125" y="26.6612491607666" />

</MRectangle>

<MEFlow id="o2" color="#000000" arcAngle="150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a7 m1.a8" />

<MAtomSetPoint atomRefs="m1.a7 m1.a9" weights="0.25 0.75" />

</MEFlow>

<MEFlow id="o3" color="#000000" arcAngle="150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a65 m1.a66" />

<MAtomSetPoint atomRefs="m1.a65 m1.a67" weights="0.25 0.75" />

</MEFlow>

<MPolyline id="o4" color="#000000" headLength="0.8" headWidth="0.5">

<MRectanglePoint pos="7" rectRef="o8" />

<MRectanglePoint pos="5" rectRef="o7" />

</MPolyline>

<MPolyline id="o5" color="#000000" headLength="0.8" headWidth="0.5">

<MRectanglePoint pos="6" rectRef="o9" />

<MRectanglePoint pos="4" rectRef="o8" />

</MPolyline>

<MPolyline id="o6" color="#000000" arcAngle="-121.8632703551369"

headLength="0.8" headWidth="0.5">

<MRectanglePoint pos="5" rectRef="o0" />

<MRectanglePoint pos="7" rectRef="o9" />

</MPolyline>

<MRectangle id="o7" color="#000000">

<MPoint x="46.20000076293945" y="25.4581241607666" />

<MPoint x="54.236873626708984" y="25.4581241607666" />

<MPoint x="54.236873626708984" y="15.015000343322754" />

<MPoint x="46.20000076293945" y="15.015000343322754" />

</MRectangle>

<MRectangle id="o8" color="#000000">

<MPoint x="54.66999816894531" y="22.859375" />

<MPoint x="64.87249755859375" y="22.859375" />

<MPoint x="64.87249755859375" y="14.678125381469727" />

<MPoint x="54.66999816894531" y="14.678125381469727" />

</MRectangle>

<MRectangle id="o9" color="#000000">

<MPoint x="55.92124938964844" y="32.388126373291016" />

<MPoint x="66.79750061035156" y="32.388126373291016" />

<MPoint x="66.79750061035156" y="23.388750076293945" />

<MPoint x="55.92124938964844" y="23.388750076293945" />

</MRectangle>

<MEFlow id="o10" color="#000000" arcAngle="248.39738999999997"

headSkip="0.15" headLength="0.5" headWidth="0.4" tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a30 m1.a42" />

<MAtomSetPoint atomRefs="m1.a29 m1.a30" />

</MEFlow>

<MEFlow id="o11" color="#000000" arcAngle="-150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.15">

<MAtomSetPoint atomRefs="m1.a13 m1.a14" />

<MAtomSetPoint atomRefs="m1.a13 m1.a24" weights="0.25 0.75" />

</MEFlow>

<MEFlow id="o12" color="#000000" arcAngle="-150.0" headSkip="0.15"

headLength="0.5" headWidth="0.4" tailSkip="0.25">

<MAtomSetPoint atomRefs="m1.a25" />

<MAtomSetPoint atomRefs="m1.a25 m1.a16" weights="0.25 0.75" />

</MEFlow>

<MChemicalStruct>

<molecule molID="m1">

<atomArray

atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18 a19 a20 a21 a22 a23 a24 a25 a26 a27 a28 a29 a30 a31 a32 a33 a34 a35 a36 a37 a38 a39 a40 a41 a42 a43 a44 a45 a46 a47 a48 a49 a50 a51 a52 a53 a54 a55 a56 a57 a58 a59 a60 a61 a62 a63 a64 a65 a66 a67"

elementType="C C C C C C C C H C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C H C C C C C C C C C C C C C C C C C C C C C C C C H"

formalCharge="0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1"

x2="48.5099983215332 47.176328980484946 47.176328980484946 48.5099983215332 49.84366766258146 49.84366766258146 51.177346784409494 52.51102590623753 53.22624969482422 57.846248626708984 56.51257928566073 56.51257928566073 57.846248626708984 59.17991796775725 59.17991796775725 60.66744374024241 62.001122862070446 64.77625274658203 63.442583405533775 63.442583405533775 64.77625274658203 66.10992208763028 66.10992208763028 61.95505763304861 61.18505763304861 56.83562469482422 55.501955353775955 55.501955353775955 56.83562469482422 58.16929403587248 58.16929403587248 59.633911258673336 59.63392789173921 60.539071614664856 62.27375030517578 60.940080964127525 60.940080964127525 62.27375030517578 63.60741964622403 63.60741964622403 58.850327792984984 58.16929403587248 48.317501068115234 46.98383172706698 46.98383172706698 48.317501068115234 49.65117040916349 49.65117040916349 52.79312515258789 51.459455811539634 51.459455811539634 52.79312515258789 54.12679449363615 54.12679449363615 51.115787631964345 51.11580426503022 52.020947987955864 51.115787631964345 41.53187561035156 40.198206269303306 40.198206269303306 41.53187561035156 42.86554495139982 42.86554495139982 43.9544893944271 45.28816851625513 44.94874954223633"

y2="31.28128296559074 30.511266025031695 28.971232143913618 28.20121520335457 28.971232143913618 30.511266025031695 31.281266025031695 30.511266025031695 27.38312530517578 31.28128296559074 30.511266025031695 28.971232143913618 28.20121520335457 28.971232143913618 30.511266025031695 30.909847354489578 30.13984735448958 27.094408575942303 26.324391635383257 24.78435775426518 24.014340813706134 24.78435775426518 26.324391635383257 24.385776424807297 25.71945554663533 22.089409415175698 21.31939247461666 19.779358593498575 19.009341652939536 19.779358593498575 21.31939247461666 21.7951919230289 19.303468097743767 20.549284731484796 18.287533347060467 17.51751640650142 15.977482525383344 15.207465584824298 15.977482525383344 17.51751640650142 22.51271723775039 18.239358593498576 23.2925344151757 22.522517474616656 20.98248359349858 20.212466652939536 20.98248359349858 22.522517474616656 18.72065979664543 17.950642856086382 16.410608974968305 15.640592034409263 16.410608974968305 17.950642856086382 22.998316923028902 20.506593097743774 21.7524097314848 24.5383169230289 31.040659491469647 30.2706425509106 28.730608669792524 27.960591729233478 28.730608669792524 30.2706425509106 31.359586993937885 30.589586993937885 28.249374389648438"

/>

<bondArray>

<bond atomRefs2="a1 a2" order="1" />

<bond atomRefs2="a2 a3" order="2" />

<bond atomRefs2="a3 a4" order="1" />

<bond atomRefs2="a4 a5" order="2" />

<bond atomRefs2="a5 a6" order="1" />

<bond atomRefs2="a1 a6" order="2" />

<bond atomRefs2="a6 a7" order="1" />

<bond atomRefs2="a7 a8" order="2" />

<bond atomRefs2="a10 a11" order="1" />

<bond atomRefs2="a11 a12" order="2" />

<bond atomRefs2="a12 a13" order="1" />

<bond atomRefs2="a13 a14" order="2" />

<bond atomRefs2="a14 a15" order="1" />

<bond atomRefs2="a10 a15" order="2" />

<bond atomRefs2="a15 a16" order="1" />

<bond atomRefs2="a16 a17" order="1" />

<bond atomRefs2="a18 a19" order="1" />

<bond atomRefs2="a19 a20" order="2" />

<bond atomRefs2="a20 a21" order="1" />

<bond atomRefs2="a21 a22" order="2" />

<bond atomRefs2="a22 a23" order="1" />

<bond atomRefs2="a18 a23" order="2" />

<bond atomRefs2="a20 a24" order="1" />

<bond atomRefs2="a24 a25" order="1" />

<bond atomRefs2="a26 a27" order="1" />

<bond atomRefs2="a27 a28" order="2" />

<bond atomRefs2="a28 a29" order="1" />

<bond atomRefs2="a29 a30" order="1" />

<bond atomRefs2="a26 a31" order="2" />

<bond atomRefs2="a30 a33" order="1" />

<bond atomRefs2="a31 a30" order="1" />

<bond atomRefs2="a32 a31" order="1" />

<bond atomRefs2="a33 a34" order="1" />

<bond atomRefs2="a32 a34" order="1" />

<bond atomRefs2="a35 a36" order="1" />

<bond atomRefs2="a36 a37" order="2" />

<bond atomRefs2="a37 a38" order="1" />

<bond atomRefs2="a38 a39" order="2" />

<bond atomRefs2="a39 a40" order="1" />

<bond atomRefs2="a35 a40" order="2" />

<bond atomRefs2="a33 a36" order="1" />

<bond atomRefs2="a32 a41" order="1" />

<bond atomRefs2="a30 a42" order="1" />

<bond atomRefs2="a43 a44" order="1" />

<bond atomRefs2="a44 a45" order="2" />

<bond atomRefs2="a45 a46" order="1" />

<bond atomRefs2="a46 a47" order="2" />

<bond atomRefs2="a43 a48" order="2" />

<bond atomRefs2="a49 a50" order="1" />

<bond atomRefs2="a50 a51" order="2" />

<bond atomRefs2="a51 a52" order="1" />

<bond atomRefs2="a52 a53" order="2" />

<bond atomRefs2="a53 a54" order="1" />

<bond atomRefs2="a49 a54" order="2" />

<bond atomRefs2="a47 a56" order="1" />

<bond atomRefs2="a48 a47" order="1" />

<bond atomRefs2="a55 a48" order="1" />

<bond atomRefs2="a56 a57" order="1" />

<bond atomRefs2="a55 a57" order="1" />

<bond atomRefs2="a56 a50" order="1" />

<bond atomRefs2="a55 a58" order="1" />

<bond atomRefs2="a59 a60" order="1" />

<bond atomRefs2="a60 a61" order="2" />

<bond atomRefs2="a61 a62" order="1" />

<bond atomRefs2="a62 a63" order="2" />

<bond atomRefs2="a63 a64" order="1" />

<bond atomRefs2="a59 a64" order="2" />

<bond atomRefs2="a64 a65" order="1" />

<bond atomRefs2="a65 a66" order="2" />

</bondArray>

</molecule>

</MChemicalStruct>

</MDocument>

User f359e526a1

11-02-2007 20:20:28

Thanks, I will have a look ASAP, it needs more than ten minutes debugging.

User f359e526a1

12-02-2007 12:34:17

Seems it happens when you draw a graphical object (rectangle/line) and an arrow attached to it (so they can move together). If later you delete the "parent" object (to the arrow is attached to) it will generate a "o0" reference (see the lineRef and rectRef tags in the mrv). Now I fixed it in MrvExport but the temporary workaround can be that when you are deleting a rectangle/line with an attached arrow, delete the arrow as well and re-draw it if needed.

User 870ab5b546

12-02-2007 13:18:58

Ahhhh...

That's going to be a tough one to enforce among the students. Can you create a new Marvin build for us that fixes that bug? I know you're crazy busy with Marvin 4.2, but if you could release one more bugfix version of Marvin 4.1, it would be very helpful to us...

User f359e526a1

12-02-2007 13:45:12

I think there will be a bugfix release soon, but we can make a pre-release if I can persuade Tamas to make a break.

ChemAxon 7c2d26e5cf

12-02-2007 16:31:38

I try to create a pre-release till tomorrow.

User f359e526a1

13-02-2007 17:12:09

Hi, the test release is at http://www.chemaxon.com/test/marvin/index.html