d-DMSO

I would like to draw d-DMSO with the groups D3C and CD3. The problem ist that the D3C Group is connected to the D and not to the C atom. Is there any possibility to correct this?

Hello, what is the source of the abbreviated group you created?

"D3C" in the left case.

Hello, is it something like:

Code:

CD3   [H]C([H])[2H]   2   leftName=D3C

(assuming there is only one H changed to deuterium). There must be a TAB among the tokens not space and it will show up like the picture I attached.

the picture looks exactly like I want it to have. Could you please give me some more Details on how you got it to look like that?

Hello, I am going to give a more detailed description, most of the things are at:


http://www.chemaxon.com/marvin/chemaxon/marvin/help/sketch-chem.html


http://www.chemaxon.com/marvin/doc/user/abbrevgroup-doc.html





i) first create your abbreviated group as usual in a window that contains only the group, nothing else - add the attachment points, etc., but do NOT drag it to the "My Templates" window yet.


ii) Open the source editor: Edit -> Source -> Format -> SMILES abbreviated group . You will have something like:

Code:

CD3   [2H]C([H])[H]   2

iii) append a TAB character to the end and the "leftName=D3C" string it will look like:

Code:

CD3   [2H]C([H])[H]   2   leftName=D3C

iv) Press Ctrl-I to import


v) Now you can drag&drop into the my templates window. Check the paste mode is "Contract" when you are adding to a molecule.





Hope it helps

thank you very much! It solved my problem!