Fail to display a smiles

Marvin failed to display the following smiles.


(It seem no problem on the Daylight site)





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COC(=O)N1[C@H]2[C@@H]3C[C@@H]4[C@H]2[C@@H]4[C@@H]3N1C(=O)OC


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Because I got the smiles from molconvert,


I don't understand why marvin don't support the output of molconvert.





And could I convert SDFile to SMARTS using molconvert or other tools?





Thanks

Hello, could you please write us the Marvin version you are using and the exception (if you get any)? I had no problems to visualise the SMILES neither with Marvin nor with molconvert (exporting to some graphics file like in the attachment).

My Marvin is 4.0.6. I got the following errors.





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C:\TMP>mview aa.smiles


java.lang.ArrayIndexOutOfBoundsException: -1


at chemaxon.marvin.modules.Parity.putToTheTop(Parity.java:2383)


at chemaxon.marvin.modules.Parity.setupStereoBonds(Parity.java:790)


at chemaxon.marvin.modules.Parity.setParity(Parity.java:424)


at chemaxon.marvin.modules.Parity.modfunc(Parity.java:167)


at chemaxon.struc.MoleculeGraph.setParity(MoleculeGraph.java:1444)


at chemaxon.struc.MoleculeGraph.setParity(MoleculeGraph.java:1413)


at chemaxon.marvin.modules.Clean2D.setStereo(Clean2D.java:3664)


at chemaxon.marvin.modules.Clean2D.startClean(Clean2D.java:477)


at chemaxon.marvin.modules.Clean2D.modfunc(Clean2D.java:259)


at chemaxon.struc.MoleculeGraph.clean(MoleculeGraph.java:2646)


at chemaxon.struc.Molecule.clean(Molecule.java:554)


at chemaxon.struc.MoleculeGraph.clean(MoleculeGraph.java:2570)


at chemaxon.marvin.common.swing.MolPanel.molLoaded(MolPanel.java:4029)


at chemaxon.marvin.view.swing.ViewPanel.molLoaded(ViewPanel.java:2166)


at chemaxon.marvin.view.swing.ViewPanel.setM(ViewPanel.java:1466)


at chemaxon.marvin.beans.MViewPane.setM(MViewPane.java:389)


at chemaxon.marvin.beans.MViewPane.setDocument(MViewPane.java:516)


at chemaxon.marvin.View.fillCells(View.java:889)


at chemaxon.marvin.View.showMolecules(View.java:747)


at chemaxon.marvin.View.main(View.java:1182)


sun.dc.pr.PRException: endPath: bad path

Thank you for the report.


We have also found this bug and already corrected it.


The next release will contain the fix.