MolConverter: make all C atoms visible in jpeg

Is there any way to convert a Molecule to a jpeg so that the C atoms are all visible (that is, marked with C instead of simply a junction). I don't see any applicable option.

If you set to display all implicit hydrogens, carbon atoms with hydrogens will be also displayed.

Quote:

byte[] data = molecule.toBinFormat("jpeg:H_all");

But if you want display all carbon atoms, this solution is not help.


In this case, I can suggest you to add an alias (a 'C' charater) to each carbon atom.

Thanks; using an alias works.

An option to display all carbons with the C label has been implemented in MarvinSketch and released in version 5.1.2. You can set this option on the General tab of the Edit > Preferences dialog. There are three options now:


- All carbon labels are visible


- No any carbon label is visible


- The old, and still default behavior: carbon labels are visible only with implicit hydrogen atoms and at carbon atoms with two (and only two) bonds in straight angle.

Is it possible to set the option "All carbon labels are visible" the default option in the applet? Any keyword in menuconfig or msketch_param?





Thanks

akospapp wrote:

An option to display all carbons with the C label has been implemented in MarvinSketch and released in version 5.1.2. You can set this option on the General tab of the Edit > Preferences dialog. There are three options now: - All carbon labels are visible - No any carbon label is visible - The old, and still default behavior: carbon labels are visible only with implicit hydrogen atoms and at carbon atoms with two (and only two) bonds in straight angle.

Hello Xavier,





yes, you can use msketch_param("sketchCarbonVisibility", "on");





Further details: http://www.chemaxon.com/marvin/help/developer/sketchman.html#parameters.showSketchCarbon





Kind regards,


Judit