User 870ab5b546
22-11-2014 17:26:24
I've had this report from a student, and similar reports from others. They're using MarvinSketch 14.11.10.0. From the description, it seems it has something to do with the electron-flow arrows.
I am able to reproduce what the student describes. It freezes if I press the Erase button and draw a box around the rectangle on the lower right. It also freezes if I delete the H or the Br of HBr in that same box. If I delete the electron-flow arrow first, no problem.
I've further isolated the problem. If you try to delete an atom that is participating in a bond, and there is an electron-flow arrow beginning at that bond, then the applet freezes. (Doesn't seem to freeze if the arrow is only ending at the bond.)
Please fix ASAP!
I continue to get an error whenever I try to erase something. I’ve attached it, and would appreciate if you could take a look at it.
it has happened for every mechanism problem (1-6). I have yet to encounter the error on the syntheses. It happens when trying to erase anything. Most of the time, it’s from highlighting a selection with the box function and clicking the eraser, but it has happened a couple times just clicking the eraser and choosing a single atom.
I’ve attached the source of one drawing that gave the error, but it happens inconsistently. I have trouble replicating it, but it’s happened several times on every question.
ERROR:
MultiFaceAtom does not have any visible face
STACK TRACE:
java.lang.RuntimeException: MultiFaceAtom does not have any visible face
at chemaxon.struc.graphics.MAtomSetPoint$MultiFaceAtom.getVisible(Unknown Source)
at chemaxon.struc.graphics.MAtomSetPoint.getAtoms(Unknown Source)
at chemaxon.struc.graphics.MEFlow.getPoint(Unknown Source)
at chemaxon.struc.graphics.MPolyline.updateArcBounds(Unknown Source)
at chemaxon.struc.graphics.MPolyline.updateBoundingRect(Unknown Source)
at chemaxon.marvin.paint.internal.BoundCalculator.a(Unknown Source)
at chemaxon.marvin.paint.internal.BoundCalculator.calcBounds(Unknown Source)
at chemaxon.marvin.paint.internal.MolPainter.a(Unknown Source)
at chemaxon.marvin.paint.internal.MolPainter.preCalcBounds(Unknown Source)
at chemaxon.marvin.sketch.MolEditor.calcMolBoundsInMolCoords(Unknown Source)
at chemaxon.marvin.sketch.MolEditor.calcMolBoundingRectangle(Unknown Source)
at chemaxon.marvin.sketch.swing.SketchPanel.b(Unknown Source)
at chemaxon.marvin.sketch.swing.SketchPanel.setScrollbars(Unknown Source)
at chemaxon.marvin.sketch.swing.SketchPanel.setScrollbars(Unknown Source)
at chemaxon.marvin.sketch.swing.SketchPanel.setAtomsize(Unknown Source)
at chemaxon.marvin.common.swing.MolPanel.molInit(Unknown Source)
at chemaxon.marvin.sketch.swing.SketchPanel.molInit(Unknown Source)
at chemaxon.marvin.common.swing.MolPanel.init(Unknown Source)
at chemaxon.marvin.applet.AbstractMarvinApplet$3.run(Unknown Source)
at java.awt.event.InvocationEvent.dispatch(Unknown Source)
at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
at java.awt.EventQueue.access$200(Unknown Source)
at java.awt.EventQueue$3.run(Unknown Source)
at java.awt.EventQueue$3.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
<?xml version="1.0" encoding="windows-1252"?>
<cml xmlns="http://www.chemaxon.com" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.chemaxon.com/marvin/schema/mrvSchema_14_10_13.xsd" version="ChemAxon file format v14.10.13, generated by v14.11.10.0">
<MDocument>
<MEFlow id="o1" arcAngle="140.0" headSkip="0.25" headLength="0.5" headWidth="0.4" tailSkip="0.25" baseElectronContainerIndex="1" baseElectronIndexInContainer="-1">
<MEFlowBasePoint atomRef="m1.a22"/>
<MAtomSetPoint atomRefs="m1.a22 m1.a23" weights="0.25 0.75"/>
</MEFlow>
<MEFlow id="o2" arcAngle="254.77468199999998" headSkip="0.6" headLength="0.5" headWidth="0.4" tailSkip="0.38" baseElectronContainerIndex="1" baseElectronIndexInContainer="0">
<MAtomSetPoint atomRefs="m1.a23 m1.a24"/>
<MAtomSetPoint atomRefs="m1.a24"/>
</MEFlow>
<MRectangle id="o3">
<MPoint x="-11.791999816894531" y="-0.3959999978542328"/>
<MPoint x="2.7720000743865967" y="-0.3959999978542328"/>
<MPoint x="2.7720000743865967" y="-11.043999671936035"/>
<MPoint x="-11.791999816894531" y="-11.043999671936035"/>
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<MPoint x="6.075228302332345" y="-6.291999816894533"/>
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<MPoint x="17.81999969482422" y="-0.35199999809265137"/>
<MPoint x="17.81999969482422" y="-11.0"/>
<MPoint x="4.443999767303467" y="-11.0"/>
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<MEFlow id="o6" arcAngle="181.79999999999998" headSkip="0.25" headLength="0.5" headWidth="0.4" tailSkip="0.25" baseElectronContainerIndex="1" baseElectronIndexInContainer="0">
<MAtomSetPoint atomRefs="m1.a33 m1.a35"/>
<MAtomSetPoint atomRefs="m1.a31 m1.a33"/>
</MEFlow>
<MEFlow id="o7" arcAngle="254.77468199999998" headSkip="1.15" headLength="0.5" headWidth="0.4" tailSkip="0.38" baseElectronContainerIndex="1" baseElectronIndexInContainer="0">
<MAtomSetPoint atomRefs="m1.a31 m1.a34"/>
<MAtomSetPoint atomRefs="m1.a34"/>
</MEFlow>
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<MAtomSetPoint atomRefs="m1.a44 m1.a46" weights="0.25 0.75"/>
</MEFlow>
<MEFlow id="o11" arcAngle="254.77468199999998" headSkip="0.6" headLength="0.5" headWidth="0.4" tailSkip="0.38" baseElectronContainerIndex="1" baseElectronIndexInContainer="0">
<MAtomSetPoint atomRefs="m1.a46 m1.a47"/>
<MAtomSetPoint atomRefs="m1.a47"/>
</MEFlow>
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</MPolyline>
<MEFlow id="o14" arcAngle="-257.0544339526754" headSkip="0.25" headLength="0.5" headWidth="0.4" tailSkip="0.25" baseElectronContainerIndex="1" baseElectronIndexInContainer="-1">
<MEFlowBasePoint atomRef="m1.a45"/>
<MAtomSetPoint atomRefs="m1.a42 m1.a45"/>
</MEFlow>
<MChemicalStruct>
<molecule molID="m1">
<atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18 a19 a20 a21 a22 a23 a24 a25 a26 a27 a28 a29 a30 a31 a32 a33 a34 a35 a36 a37 a38 a39 a40 a41 a42 a43 a44 a45 a46 a47 a48 a49 a50 a51 a52 a53 a54 a55 a56 a57 a58 a59" elementType="C C C C C C C C C O H Br C C C C C C C C C O H Br C C C C C C C C C O H C C C C C C C C C O Br Br C C C C C C C C C O Br H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0" x2="8.731249313354493 7.397579972306234 7.397579972306234 8.731249313354493 10.064918654402751 10.064918654402751 11.529535877203616 11.529552510269484 12.434696233195128 11.928117206661497 13.768375355023164 13.768375355023164 -7.465560189338511 -8.79922953038677 -8.79922953038677 -7.465560189338511 -6.1318908482902525 -6.1318908482902525 -4.667273625489388 -4.667256992423519 -3.762113269497876 -4.268692296031507 -1.5538622421297674 -0.013862242129767388 9.251780168319652 7.918110827271393 7.918110827271393 9.251780168319652 10.58544950936791 10.58544950936791 12.050066732168775 12.050083365234643 12.955227088160287 12.448648061626656 14.495227088160288 23.73020602208651 22.396536681038253 22.396536681038253 23.73020602208651 25.06387536313477 25.06387536313477 26.528492585935634 26.528509219001503 27.433652941927146 26.927073915393517 28.75400016784668 30.29400016784668 23.413652637926063 22.079983296877813 22.079983296877813 23.413652637926063 24.747321978974327 24.747321978974327 26.211939201775195 26.211955834841064 27.117099557766707 26.610520531233078 28.60462533025187 28.09804630371824" y2="8.083658511092446 7.313641570533406 5.773607689415325 5.0035907488562845 5.773607689415325 7.313641570533406 7.789557939946231 5.297834114661097 6.543650748402126 9.277083712431397 7.313650748402125 5.773650748402126 -6.175355974076849 -6.945372914635891 -8.48540679575397 -9.255423736313013 -8.48540679575397 -6.945372914635891 -6.469456545223066 -8.961180370508199 -7.715363736767172 -4.981930772737899 -2.7856376522508013 -2.7856376522508013 -4.953282540039476 -5.723299480598518 -7.263333361716598 -8.03335030227564 -7.263333361716598 -5.723299480598518 -5.247383111185693 -7.739106936470826 -6.493290302729799 -3.7598573387005256 -6.493290302729799 -4.860007149772235 -5.630024090331277 -7.170057971449358 -7.9400749120084 -7.170057971449358 -5.630024090331277 -5.154107720918452 -7.645831546203587 -6.400014912462558 -3.6665819484332847 -5.015999794006348 -5.015999794006348 6.883490150304214 6.113473209745171 4.5734393286270905 3.803422388068048 4.5734393286270905 6.113473209745171 6.589389579157997 4.097665753872862 5.343482387613891 8.076915351643164 5.7420637170717725 8.475496681101045"/>
<bondArray>
<bond id="b1" atomRefs2="a1 a2" order="1"/>
<bond id="b2" atomRefs2="a1 a6" order="2"/>
<bond id="b3" atomRefs2="a2 a3" order="2"/>
<bond id="b4" atomRefs2="a3 a4" order="1"/>
<bond id="b5" atomRefs2="a4 a5" order="2"/>
<bond id="b6" atomRefs2="a5 a8" order="1"/>
<bond id="b7" atomRefs2="a6 a5" order="1"/>
<bond id="b8" atomRefs2="a7 a6" order="1"/>
<bond id="b9" atomRefs2="a7 a10" order="2"/>
<bond id="b10" atomRefs2="a7 a9" order="1"/>
<bond id="b11" atomRefs2="a8 a9" order="1"/>
<bond id="b12" atomRefs2="a9 a11" order="1"/>
<bond id="b13" atomRefs2="a9 a12" order="1"/>
<bond id="b14" atomRefs2="a13 a14" order="1"/>
<bond id="b15" atomRefs2="a13 a18" order="2"/>
<bond id="b16" atomRefs2="a14 a15" order="2"/>
<bond id="b17" atomRefs2="a15 a16" order="1"/>
<bond id="b18" atomRefs2="a16 a17" order="2"/>
<bond id="b19" atomRefs2="a19 a18" order="1"/>
<bond id="b20" atomRefs2="a18 a17" order="1"/>
<bond id="b21" atomRefs2="a17 a20" order="1"/>
<bond id="b22" atomRefs2="a19 a21" order="1"/>
<bond id="b23" atomRefs2="a20 a21" order="1"/>
<bond id="b24" atomRefs2="a19 a22" order="2"/>
<bond id="b25" atomRefs2="a23 a24" order="1"/>
<bond id="b26" atomRefs2="a25 a26" order="1"/>
<bond id="b27" atomRefs2="a25 a30" order="2"/>
<bond id="b28" atomRefs2="a26 a27" order="2"/>
<bond id="b29" atomRefs2="a27 a28" order="1"/>
<bond id="b30" atomRefs2="a28 a29" order="2"/>
<bond id="b31" atomRefs2="a31 a30" order="1"/>
<bond id="b32" atomRefs2="a30 a29" order="1"/>
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<bond id="b38" atomRefs2="a36 a37" order="1"/>
<bond id="b39" atomRefs2="a36 a41" order="2"/>
<bond id="b40" atomRefs2="a37 a38" order="2"/>
<bond id="b41" atomRefs2="a38 a39" order="1"/>
<bond id="b42" atomRefs2="a39 a40" order="2"/>
<bond id="b43" atomRefs2="a42 a41" order="1"/>
<bond id="b44" atomRefs2="a41 a40" order="1"/>
<bond id="b45" atomRefs2="a40 a43" order="1"/>
<bond id="b46" atomRefs2="a42 a44" order="2"/>
<bond id="b47" atomRefs2="a43 a44" order="1"/>
<bond id="b48" atomRefs2="a42 a45" order="1"/>
<bond id="b49" atomRefs2="a46 a47" order="1"/>
<bond id="b50" atomRefs2="a48 a49" order="1"/>
<bond id="b51" atomRefs2="a48 a53" order="2"/>
<bond id="b52" atomRefs2="a49 a50" order="2"/>
<bond id="b53" atomRefs2="a50 a51" order="1"/>
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<bond id="b57" atomRefs2="a52 a55" order="1"/>
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<bond id="b61" atomRefs2="a56 a58" order="1"/>
<bond id="b62" atomRefs2="a57 a59" order="1"/>
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</molecule>
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<MElectronContainer id="o31" occupation="1 1" radical="0">
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<MElectronContainer id="o32" occupation="0 0" radical="0">
<MElectron atomRefs="m1.a46" difLoc="-0.4226698230675652 0.11325403775595966 0.0"/>
<MElectron atomRefs="m1.a46" difLoc="-0.4226698230675652 -0.11325403775596321 0.0"/>
</MElectronContainer>
<MElectronContainer id="o33" occupation="0 0" radical="0">
<MElectron atomRefs="m1.a46" difLoc="0.11325403775596499 0.42266982306756695 0.0"/>
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<MElectronContainer id="o34" occupation="0 0" radical="0">
<MElectron atomRefs="m1.a46" difLoc="-0.11325403775595788 -0.42266982306757406 0.0"/>
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<MElectronContainer id="o35" occupation="0 0" radical="0">
<MElectron atomRefs="m1.a47" difLoc="0.4226698230675723 -0.11325403775596321 0.0"/>
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</MElectronContainer>
<MElectronContainer id="o36" occupation="0 0" radical="0">
<MElectron atomRefs="m1.a47" difLoc="0.11325403775596499 0.42266982306756695 0.0"/>
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</MElectronContainer>
<MElectronContainer id="o37" occupation="0 0" radical="0">
<MElectron atomRefs="m1.a47" difLoc="-0.11325403775595788 -0.42266982306757406 0.0"/>
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</MElectronContainer>
<MElectronContainer id="o38" occupation="0 0" radical="0">
<MElectron atomRefs="m1.a58" difLoc="0.4375800000000005 -8.881784197001252E-16 0.0"/>
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</MElectronContainer>
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