Hi Megan,
yes we are aware of this information, but unfortunately we can not do much about that regarding Marvin Applets.
Google Chrome will drop the support of NPAPI which is used by Java Applets, on Linux platform this has happend in mid may this year already, and on other platforms they are planning to drop NPAPI support in Q2 2015.
As far as I can tell (and I googled a lot in this topic), Firefox changed the NPAPI plugins handling, and for a while the user has to enable the running of such a plugin in a pop-up, when a site tries to start one, but they are not planning to drop the NPAPI support completely as Chrome does.
According to Internet Explorer as far as I know, it does not support NPAPI for ages. In Internet Explorer Java is running as an ActiveX control, and they do not plan to retire ActiveX this far.
Why we can not really do much about the retirement of the plugin? It is out of our scope, if the browser does not support Java anymore, either Oracle, or the Browser vendor should do something about it. There are rumors of a possible replacement of NPAPI based Java plugin with a PPAPI (used by for example Flash), but I could not find anything about this that is reliable enough, and also it seems a bit unrealistic for some professionals in this area, so most probably after Chrome removes NPAPI Java applets will not work in Chrome anymore.
What we could do about this issue, to develop Marvin JS, which is currently suitable as a replacement for most of our users, and we are actively developing it for the web even for Academic teaching and examination purposes as well as query structure sketching.
I hope this helps to understand our point of view on this issue, if you have further questions, suggestions or information, they are welcome, and we are happy to discuss them on this question.
Regards,
Istvan