User 25dd7ac381
11-12-2013 23:20:43
Copy/paste or using the setmol function in Marvin Applet 6.1.4 does not render the SMILES below:
COc1ccccc1OC(=O)C12CCC(C)(C(=O)O1)C2(C)C
This structure does render on an older version of Marvin (5.2.5).
Here is the stack trace from the Java console:
Exception in thread "AWT-EventQueue-2"
java.lang.NullPointerException
at chemaxon.calculations.clean.Clean2D.locateTarget(Unknown
Source)
at
chemaxon.calculations.clean.Clean2D.checkTemplateFiles(Unknown Source)
at
chemaxon.calculations.clean.Clean2D.setCoordinatesFromTemplates(Unknown Source)
at chemaxon.calculations.clean.Clean2D.setRingSystem(Unknown
Source)
at
chemaxon.calculations.clean.Clean2D.calcRingCoordinates(Unknown Source)
at chemaxon.calculations.clean.Clean2D.setCoordinatesForRings(Unknown
Source)
at
chemaxon.calculations.clean.Clean2D.calcInitialGeometry(Unknown Source)
at chemaxon.calculations.clean.Clean2D.cleanFragment(Unknown
Source)
at chemaxon.calculations.clean.Clean2D.cleanMoleculeStructure(Unknown
Source)
at chemaxon.calculations.clean.Clean2D.clean(Unknown Source)
at chemaxon.calculations.clean.Clean2D.clean(Unknown Source)
at chemaxon.calculations.clean.Cleaner.cleanMolGraph(Unknown
Source)
at chemaxon.calculations.clean.Cleaner.cleanMol(Unknown
Source)
at chemaxon.calculations.clean.Cleaner.clean(Unknown Source)
at chemaxon.calculations.clean.Cleaner.clean(Unknown Source)
at
chemaxon.marvin.common.swing.MolPanel.applySettings(Unknown Source)
at chemaxon.marvin.sketch.swing.SketchPanel.a(Unknown
Source)
at chemaxon.marvin.sketch.swing.SketchPanel.setMol(Unknown
Source)
at chemaxon.marvin.sketch.swing.SketchPanel.f(Unknown
Source)
at chemaxon.marvin.sketch.swing.SketchPanel.doPaste(Unknown
Source)
at
chemaxon.marvin.sketch.swing.actions.PasteAction.actionPerformed(Unknown
Source)
at
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
at
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at
java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:290)
at java.awt.Component.processMouseEvent(Component.java:6505)
at
javax.swing.JComponent.processMouseEvent(JComponent.java:3320)
at java.awt.Component.processEvent(Component.java:6270)
at java.awt.Container.processEvent(Container.java:2229)
at java.awt.Component.dispatchEventImpl(Component.java:4861)
at java.awt.Container.dispatchEventImpl(Container.java:2287)
at java.awt.Component.dispatchEvent(Component.java:4687)
at
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
at
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
at
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
at java.awt.Container.dispatchEventImpl(Container.java:2273)
at java.awt.Component.dispatchEvent(Component.java:4687)
at
java.awt.EventQueue.dispatchEventImpl(EventQueue.java:735)
at java.awt.EventQueue.access$200(EventQueue.java:103)
at java.awt.EventQueue$3.run(EventQueue.java:694)
at java.awt.EventQueue$3.run(EventQueue.java:692)
at java.security.AccessController.doPrivileged(Native
Method)
at
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
at
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.awt.EventQueue$4.run(EventQueue.java:708)
at java.awt.EventQueue$4.run(EventQueue.java:706)
at java.security.AccessController.doPrivileged(Native
Method)
at
java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:705)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
at
java.awt.EventDispatchThread.run(EventDispatchThread.java:91)