User d6d35b90ea
14-07-2009 16:02:24
Dear ChemAxon,
I've worked with the chemaxon software (JChem 5.2) on my personal macintosh and it has always run pretty well. I attempted to install on my linux workstation (CenTOS 4.7) and came out with a number of errors when using the standardizer. Both the commandline and the gui versions seem to fail. Attached are the errors for the commandline, then the errors for the gui follow. Any guidance is appreciated.
thanks,
Pahk
[pthepch@spider01 tautomer-lib]$ /opt/chemaxon/jchem/bin/standardize ko-tat.smi -o ko-stand.smi
Warning: -Xmx200M not understood. Ignoring.
Exception in thread "main" java.lang.NoClassDefFoundError: while resolving class: chemaxon.reaction.ConcurrentStandardizerProcessor
at java.lang.VMClassLoader.resolveClass(java.lang.Class) (/usr/lib/libgcj.so.5.0.0)
at java.lang.Class.initializeClass() (/usr/lib/libgcj.so.5.0.0)
at java.lang.Class.forName(java.lang.String, boolean, java.lang.ClassLoader) (/usr/lib/libgcj.so.5.0.0)
at java.lang.Class.forName(java.lang.String) (/usr/lib/libgcj.so.5.0.0)
at gnu.gcj.runtime.FirstThread.run() (/usr/lib/libgcj.so.5.0.0)
at _Jv_ThreadRun(java.lang.Thread) (/usr/lib/libgcj.so.5.0.0)
at _Jv_RunMain(java.lang.Class, byte const, int, byte const, boolean) (/usr/lib/libgcj.so.5.0.0)
at __gcj_personality_v0 (/home/pthepch/QNAP/exercises/tautomer-lib/java.version=1.4.2)
at __libc_start_main (/lib/tls/libc-2.3.4.so)
at _Jv_RegisterClasses (/home/pthepch/QNAP/exercises/tautomer-lib/java.version=1.4.2)
Caused by: java.lang.ClassNotFoundException: java.util.concurrent.ExecutionException not found in [file:/opt/chemaxon/jchem/bin/../lib/jchem.jar, file:/usr/share/java/libgcj-3.4.6.jar, file:./, core:/]
at java.net.URLClassLoader.findClass(java.lang.String) (/usr/lib/libgcj.so.5.0.0)
at gnu.gcj.runtime.VMClassLoader.findClass(java.lang.String) (/usr/lib/libgcj.so.5.0.0)
at java.lang.ClassLoader.loadClass(java.lang.String, boolean) (/usr/lib/libgcj.so.5.0.0)
at _Jv_FindClass(_Jv_Utf8Const, java.lang.ClassLoader) (/usr/lib/libgcj.so.5.0.0)
at java.lang.Class.forName(java.lang.String, boolean, java.lang.ClassLoader) (/usr/lib/libgcj.so.5.0.0)
at _Jv_BytecodeVerifier.pop_init_ref(_Jv_BytecodeVerifier.type) (/usr/lib/libgcj.so.5.0.0)
at _Jv_BytecodeVerifier.verify_instructions_0() (/usr/lib/libgcj.so.5.0.0)
at _Jv_VerifyMethod(_Jv_InterpMethod) (/usr/lib/libgcj.so.5.0.0)
at _Jv_PrepareClass(java.lang.Class) (/usr/lib/libgcj.so.5.0.0)
at _Jv_WaitForState(java.lang.Class, int) (/usr/lib/libgcj.so.5.0.0)
at java.lang.VMClassLoader.linkClass0(java.lang.Class) (/usr/lib/libgcj.so.5.0.0)
at java.lang.VMClassLoader.resolveClass(java.lang.Class) (/usr/lib/libgcj.so.5.0.0)
...9 more
[pthepch@spider05 tautomer-lib]$ Standardizer
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at javax.swing.ImageIcon.<init>(Unknown Source)
at chemaxon.alchemist.utils.AlchemistLabel.refreshIcon(Unknown Source)
at chemaxon.alchemist.utils.AlchemistLabel.initialize(Unknown Source)
at chemaxon.alchemist.utils.AlchemistLabel.<init>(Unknown Source)
at chemaxon.alchemist.Alchemist.getLicenseLabel(Unknown Source)
at chemaxon.alchemist.Alchemist.setProgressObjects(Unknown Source)
at chemaxon.alchemist.AlchemistController.initAlchemist(Unknown Source)
at chemaxon.alchemist.standardizer.StandardizerAlchemistController.<init>(Unknown Source)
at chemaxon.alchemist.standardizer.StandardizerAlchemistController.<init>(Unknown Source)
at chemaxon.alchemist.standardizer.StandardizerAlchemistController.<init>(Unknown Source)
at chemaxon.alchemist.standardizer.StandardizerAlchemistController.<init>(Unknown Source)
at chemaxon.alchemist.standardizer.StandardizerAlchemist.createAndShowGUI(Unknown Source)
at chemaxon.alchemist.standardizer.StandardizerAlchemist.access$000(Unknown Source)
at chemaxon.alchemist.standardizer.StandardizerAlchemist$1.run(Unknown Source)
at java.awt.event.InvocationEvent.dispatch(Unknown Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)