Convert double bonds to wiggly representation

Hi,





When I am trying to convert double bonds with unspecified CIS/TRANS stereo information to wiggly or crossed representation, I am not getting the desired output. My input, output and the xml configuration files have been attached.





I have 10K records in an sd file and I want to convert the double bond representations for only 200 structures those are having unknown double bond configurations. Will this tool convert all the double bonds of input sdf into wiggly representation? Or can we customize this tool to execute this task only for 200 structures?





Thanks in advance.


Henry

Not your attached input nor output contains unspecified double bond. So nothing happens during the conversion on my computer. Which version of Standardizer are you using?

Version 5.1.2

Which molecule can be used to reproduce the problem you reported?





Input.sdf contains one molecule, and it has a trans double bond. So the convert double bonds action of Standardizer does not change it. That action applies to unspecified double bonds only (straigth, wiggly, crossed).