System() call of standardize in WinXP

I'm trying to call standardize from a C program via system() in WinXP:


system ("standardize b.mol -c hydrogenize..clean:3 -f sdf -o b_std.mol")





but nothing happens. If I save the same command to a z.bat file and call the .bat file with system("z.bat") I get the message "Program too big to fit in memory". But if I type 'z' at the command line it works ok.





I've also tried java -cp "c:\Progra~1\ChemAxon\JChem\lib\jchem.jar;%CLASSPATH%\" chemaxon.reaction.Standardizer ...


but the result is the same.





Could anyone help?

mstrin wrote:

I'm trying to call standardize from a C program via system() in WinXP: system ("standardize b.mol -c hydrogenize..clean:3 -f sdf -o b_std.mol") but nothing happens.

Use

Code:

system ("standardize.bat b.mol -c hydrogenize..clean:3 -f sdf -o b_std.mol")

The command interpreter does not translate "standardize" to "standardize.bat" if it is passed to operating system by system() function, I think (note: the directory of "standardize.bat" has to be in the $PATH environmental variable of your system).

Quote:

If I save the same command to a z.bat file and call the .bat file with system("z.bat") I get the message "Program too big to fit in memory". But if I type 'z' at the command line it works ok. I've also tried java -cp "c:\Progra~1\ChemAxon\JChem\lib\jchem.jar;%CLASSPATH%\" chemaxon.reaction.Standardizer ... but the result is the same. Could anyone help?

I can not reproduce the "Program too big to fit in memory" error. The following C code compiles and runs fine on my computer:

Code:

int main() {     system ("standardize.bat b.mol -c hydrogenize..clean:3 -f sdf -o b_std.mol"); }

I compiled it with MinGW compiler.





I think this problem is rather related to your compiler.





Regards,


Zsolt