How to arrange molecules in multiple columns

Hi, I'm trying to arrange all the fragments of a molecule into a single row, making best use of the vertical space to draw the biggest fragment as large as possible.

I'm using CleanUtil.arrangeMolecules but can't seem to get it to do what I want.

Code and a couple of images attached.

Thanks for looking,

~Mark.

Hi Mark,

The problem is that the molecules are in 0d representation when they are arranged.

you should call Cleaner.clean(mol[0], 2); before calling Cleaner.arrangeMolecules(); or call it after import on each molecule.

The behavior of the API is misleading, we will improve it.

 

Best regards,

Peter

Working, thank you:-).