Replace Atoms

User c3397108ba

09-02-2015 11:23:23

Hi,


 


Can "Replace Atoms" work with SMARTS defined "Query Atom"?


I would like to Replace all: [CD3;R;$(C[#7][#6]=[#8])] with a [At] for example.


Right now "Replace Atoms" with such defined "Query Atom" replaces all C atoms with At.


 


If not with "Replace Atoms" can this be achieved with any other function in Standardizer?


Thanks in advance for your help!

ChemAxon e08c317633

10-02-2015 09:36:47

Hi,


Use the Transform action with "Exact match query atom" option. See the attached screenshots.
Replace atoms cannot handle query atoms.