Error: Failed to get abbreviations.

Hi,

 

Running the latest (14.7.14.0) version of JChem, I have the following error. I load in a config file for the standardizer, and run the following:

Standardizer standardizer = new Standardizer(standardizerConfigFile);

I get the following cryptic message:

chemaxon.standardizer.advancedactions.GroupList setAll


SEVERE: Failed to get abbreviations.

Possibly there's a library missing (though this isn't a ClassDef error), but I'm at a loss as to which one I'm not including. I'm hoping someone can at least explain what the error means and where I'm going wrong.

Cheers,

Brendan

Hi Brendan,

Could you upload your standardizer XML configuration file here, so we can use it to reproduce the error?
You can also send it by email to standardizer-support _at_ chemaxon.com 

Zsolt

Hi Zsolt,

Attached. I suspect this isn't really a standardizer error but rather one of the .jar library files missing in my POM, but with such a cryptic message I'm not sure which one to look in.

Cheers,

Brendan

Brendan,

It seems standardizer cannot find the "/chemaxon/marvin/templates/default.abbrevgroup" file, which is required by some standardizer actions. The default.abbrevgroup file is located in com.chemaxon-marvin-gui.jar module, so you need to add this module.

Let me know if it works.

Zsolt

Hi Zsolt,

Many thanks, all working now. I never thought marvin-gui would hold it....

Cheers,

Brendan