Molecule.toFormat()

Hi, is there a way to suppress information messages from molecule.toFormat() ?

(e.g. Omitted undefined stereo)

Could you send me an example?

volfi wrote:

Could you send me an example?

For example :

String tmpInchi = molecule.toFormat("inchi:key,AuxNone");

in console it gives out various informational messages, like i mentioned in the first post.

is there a way to turn off these messages/warnings, so everything operates in silent mode, or

redirect them not by intercepting system.out stream but in a reasonable manner?

Hi,

We already have a request about an option for not displaying these messages, it is currently planned for 5.8 .

Until then these messages are written to System.err, so as a quick fix, if You do not need any error messages, You can redirect it and use only the stream on System.out.

Best Regards,

Peter

pvadasz wrote:

We already have a request about an option for not displaying these messages, it is currently planned for 5.8 .

This behavior is still present in 5.11

Hi, 

 

We have introduced "Woff" export options to stop warning messages during InChi export in 5.8.

So instead of

kicek wrote:

String tmpInchi = molecule.toFormat("inchi:key,AuxNone");

you should write 

String tmpInchi = molecule.toFormat("inchi:key,AuxNone,Woff");

 

I'm sorry for not notifying you about this any sooner.

Best regards, 

Peter