User b54d574d3c
30-03-2015 11:42:05
Hey,
i will convert smiles to an .sdf and calculate the 3D coordinates. That was so far possible, now i want to write additional information in the sdf file.
My first command is
./molconvert sdf smiles.txt{smiles} -g -o t2.sdf
but it gets only the 3d coordinates without any additional informations, for example:
./molconvert sdf smiles.txt{smiles} -g -o t2.sdf
BENZOPHENONE, 4-BROMO-
Mrv1539 03301511542D
15 16 0 0 0 0 999 V2000
2.1434 -2.8875 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
1.4289 -2.4750 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
........
M END
$$$$
I want, that the smiles and inchikeys are also displayed in the file, for example:
BENZOPHENONE, 4-BROMO-
Mrv1539 03301511542D
15 16 0 0 0 0 999 V2000
2.1434 -2.8875 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
1.4289 -2.4750 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
........
M END
> <HBD>
0
> <HBA>
1
> <molwt>
277.94064
> <InChI>
FKJSFKCZZIXQIP-UHFFFAOYSA-N
> <Smile>
c1cc(ccc1C(=O)CBr)Br
> <RotBonds>
2
$$$$
Thats just an random example to illustrate you my problem.
Are there some options to write these informations with chemaxon?
my smile.txt looks like this:
Cc1cccc(c1Br)C BENZENE, 2-BROMO-1,3-DIMETHYL-
I would be realy grateful for your help.